Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | LEUCM_RS05780 | Genome accession | NZ_AP017929 |
| Coordinates | 1154686..1155693 (+) | Length | 335 a.a. |
| NCBI ID | WP_056936423.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1149686..1160693
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LEUCM_RS05750 (LACBS_01130) | - | 1150307..1151707 (+) | 1401 | WP_025016379.1 | hypothetical protein | - |
| LEUCM_RS05760 (LACBS_01131) | - | 1151894..1152268 (-) | 375 | WP_011375004.1 | hypothetical protein | - |
| LEUCM_RS05765 (LACBS_01132) | - | 1152365..1152865 (+) | 501 | WP_016265379.1 | VanZ family protein | - |
| LEUCM_RS05770 (LACBS_01133) | - | 1152956..1153687 (+) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LEUCM_RS05775 (LACBS_01134) | comGA | 1153803..1154693 (+) | 891 | WP_025016380.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LEUCM_RS05780 (LACBS_01135) | comGB | 1154686..1155693 (+) | 1008 | WP_056936423.1 | type II secretion system F family protein | Machinery gene |
| LEUCM_RS05785 (LACBS_01136) | comGC | 1155690..1155989 (+) | 300 | WP_025016383.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| LEUCM_RS05790 (LACBS_01137) | comGD | 1155961..1156413 (+) | 453 | WP_025016384.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LEUCM_RS05795 (LACBS_01138) | comGE | 1156400..1156705 (+) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| LEUCM_RS05800 (LACBS_01139) | comGF | 1156680..1157192 (+) | 513 | WP_025016386.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LEUCM_RS05805 (LACBS_01140) | - | 1157155..1157505 (+) | 351 | WP_096695394.1 | hypothetical protein | - |
| LEUCM_RS05810 (LACBS_01141) | - | 1157607..1158626 (+) | 1020 | WP_241652828.1 | class I SAM-dependent methyltransferase | - |
| LEUCM_RS05815 (LACBS_01142) | - | 1158648..1159844 (+) | 1197 | WP_025016389.1 | acetate/propionate family kinase | - |
| LEUCM_RS05820 (LACBS_01143) | - | 1159899..1160357 (+) | 459 | WP_025016390.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38452.40 Da Isoelectric Point: 9.5446
>NTDB_id=68556 LEUCM_RS05780 WP_056936423.1 1154686..1155693(+) (comGB) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVHFPADYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRHREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKSRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVHFPADYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRHREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=68556 LEUCM_RS05780 WP_056936423.1 1154686..1155693(+) (comGB) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTATAAGTCACGACAACAAGCGCAATTTTATGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTACAACAAGCTTTTGCTTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGTGACAGTCTGGCAGTCAGTTTAGCGCATGTTCATTTTCCGGCTGATTATGTTGGTCAAATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAGCGCCATCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTGAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTCACGACAACAAGCGCAATTTTATGCCGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGCTTTTC
ATTACAACAAGCTTTTGCTTTCTTACCGATTGTCTTTCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGTGACAGTCTGGCAGTCAGTTTAGCGCATGTTCATTTTCCGGCTGATTATGTTGGTCAAATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAGCGCCATCGAGAAATACG
GGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTGAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.209 |
100 |
0.982 |