Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   EFK13_RS18660 Genome accession   NZ_CP096889
Coordinates   3660071..3660412 (-) Length   113 a.a.
NCBI ID   WP_129507361.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3655071..3665412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS18645 (EFK13_18645) - 3655308..3658076 (+) 2769 WP_129507364.1 DEAD/DEAH box helicase -
  EFK13_RS18650 (EFK13_18650) - 3658206..3659063 (-) 858 WP_129507363.1 Cof-type HAD-IIB family hydrolase -
  EFK13_RS18655 (EFK13_18655) glcR 3659069..3659845 (-) 777 WP_129507362.1 transcriptional regulator GlcR -
  EFK13_RS18660 (EFK13_18660) ssbB 3660071..3660412 (-) 342 WP_129507361.1 single-stranded DNA-binding protein SsbB Machinery gene
  EFK13_RS18665 (EFK13_18665) ywpG 3660489..3660872 (-) 384 WP_129507360.1 DynA interaction protein YwpG -
  EFK13_RS18670 (EFK13_18670) - 3661049..3661459 (+) 411 WP_064816066.1 YwpF-like family protein -
  EFK13_RS18675 (EFK13_18675) blaOXA 3661506..3662309 (+) 804 WP_129507359.1 class D beta-lactamase -
  EFK13_RS18680 (EFK13_18680) mscL 3662343..3662735 (-) 393 WP_129507358.1 large conductance mechanosensitive channel protein MscL -
  EFK13_RS18685 (EFK13_18685) fabZ 3662808..3663233 (-) 426 WP_003235662.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EFK13_RS18690 (EFK13_18690) rapD 3663425..3664489 (+) 1065 WP_129507357.1 aspartate phosphatase RapD -
  EFK13_RS18695 (EFK13_18695) flhP 3664511..3665320 (-) 810 WP_064816063.1 flagellar hook-basal body complex protein FlhP -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12460.14 Da        Isoelectric Point: 7.8189

>NTDB_id=684908 EFK13_RS18660 WP_129507361.1 3660071..3660412(-) (ssbB) [Bacillus cabrialesii strain TE3]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVFVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=684908 EFK13_RS18660 WP_129507361.1 3660071..3660412(-) (ssbB) [Bacillus cabrialesii strain TE3]
ATGTTCAATCAGGTCATGCTTGTCGGACGACTTACAAAAGATCCTGAGCTTCGCTACACTTCCGCCGGTGCGGCAGTCGC
ACACGTTACACTCGCGGTAAACCGCAGCTTCAAAAACGCTTCAGGTGAAATCGAGGCCGATTACGTTAATTGCACGCTTT
GGAGAAAAACAGCTGAGAACACGGCGCTGTATTGCCAAAAAGGTTCTCTCGTCGGTGTAAGCGGACGGATTCAGACACGA
AGCTATGAAAACGCAGAAGGCGTTAACGTCTTTGTAACGGAAGTGCTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
GCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

97.345

100

0.973
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.038

93.805

0.619
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

93.805

0.434
  ssbA Streptococcus mutans UA159

46.226

93.805

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389