Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   M1I95_RS01920 Genome accession   NZ_CP096885
Coordinates   387897..388259 (+) Length   120 a.a.
NCBI ID   WP_048004891.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 382897..393259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS01880 (M1I95_01880) - 383501..383758 (+) 258 WP_048004884.1 DNA-directed RNA polymerase subunit beta -
  M1I95_RS01885 (M1I95_01885) fabZ 383860..384294 (+) 435 WP_318548867.1 3-hydroxyacyl-ACP dehydratase FabZ -
  M1I95_RS01890 (M1I95_01890) - 384346..384909 (-) 564 WP_318548868.1 class D sortase -
  M1I95_RS01895 (M1I95_01895) - 384906..385199 (-) 294 WP_318548870.1 helix-turn-helix domain-containing protein -
  M1I95_RS01900 (M1I95_01900) - 385535..386107 (+) 573 WP_318548871.1 LPXTG cell wall anchor domain-containing protein -
  M1I95_RS01905 (M1I95_01905) - 386576..386728 (+) 153 WP_082347059.1 anti-repressor SinI family protein -
  M1I95_RS01910 (M1I95_01910) - 386778..387098 (-) 321 WP_317951155.1 helix-turn-helix domain-containing protein -
  M1I95_RS01915 (M1I95_01915) - 387193..387636 (-) 444 WP_318548874.1 YwpF-like family protein -
  M1I95_RS01920 (M1I95_01920) ssbB 387897..388259 (+) 363 WP_048004891.1 single-stranded DNA-binding protein Machinery gene
  M1I95_RS01925 (M1I95_01925) - 388278..388442 (+) 165 WP_156450683.1 hypothetical protein -
  M1I95_RS01930 (M1I95_01930) - 388631..391450 (-) 2820 WP_318548875.1 DEAD/DEAH box helicase -
  M1I95_RS01935 (M1I95_01935) - 391443..393068 (-) 1626 WP_318548876.1 SWIM zinc finger domain-containing protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13665.48 Da        Isoelectric Point: 9.0849

>NTDB_id=684743 M1I95_RS01920 WP_048004891.1 387897..388259(+) (ssbB) [Rossellomorea marisflavi strain B3]
MINQVTLVGRLTKDPESRKTLEGKSVLNVTVAVNRQFKNQQGQIDTDFVLCTLWNRAADNTEKYCRKGSVIGVTGRIQTR
SYENETGKRTYVTEVVAENVRFLDSKPPEETRKEAIEIPF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=684743 M1I95_RS01920 WP_048004891.1 387897..388259(+) (ssbB) [Rossellomorea marisflavi strain B3]
GTGATCAATCAAGTGACGCTTGTTGGCAGGCTGACGAAGGACCCCGAGTCCAGGAAAACCCTTGAAGGAAAATCGGTCCT
CAATGTGACCGTGGCCGTGAACCGTCAATTCAAGAATCAGCAGGGGCAGATCGATACGGATTTTGTCCTCTGCACGCTGT
GGAACAGGGCAGCGGATAATACGGAGAAATACTGCCGGAAGGGGTCCGTCATCGGAGTGACTGGAAGGATCCAGACGAGA
TCCTATGAAAATGAAACGGGAAAGCGCACGTATGTGACGGAAGTGGTAGCCGAAAACGTCCGTTTCCTCGACAGCAAGCC
TCCCGAAGAAACGAGGAAGGAAGCGATCGAGATCCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.162

92.5

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.717

88.333

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

48.673

94.167

0.458
  ssbA Streptococcus mutans UA159

43.363

94.167

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.363

94.167

0.408
  ssbB/cilA Streptococcus pneumoniae R6

42.478

94.167

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

42.478

94.167

0.4
  ssbB/cilA Streptococcus pneumoniae D39

42.478

94.167

0.4
  ssbB/cilA Streptococcus mitis SK321

42.478

94.167

0.4
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.478

94.167

0.4
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

94.167

0.392
  ssbB Lactococcus lactis subsp. cremoris KW2

38.793

96.667

0.375