Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SNAG_RS03125 Genome accession   NZ_AP017652
Coordinates   575288..575758 (+) Length   156 a.a.
NCBI ID   WP_000609596.1    Uniprot ID   A0A139PWT6
Organism   Streptococcus sp. NPS 308     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 570288..580758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS03100 (SNAG_0612) - 570352..570828 (+) 477 WP_096406433.1 DUF5590 domain-containing protein -
  SNAG_RS03105 (SNAG_0613) - 570838..572016 (+) 1179 WP_096406435.1 pyridoxal phosphate-dependent aminotransferase -
  SNAG_RS03110 (SNAG_0614) asnS 572166..573512 (+) 1347 WP_172842415.1 asparagine--tRNA ligase -
  SNAG_RS03115 (SNAG_0615) - 573645..574853 (+) 1209 WP_096406440.1 MFS transporter -
  SNAG_RS03120 (SNAG_0616) rpsF 574986..575276 (+) 291 WP_001151782.1 30S ribosomal protein S6 -
  SNAG_RS03125 (SNAG_0617) ssbA 575288..575758 (+) 471 WP_000609596.1 single-stranded DNA-binding protein SsbA Machinery gene
  SNAG_RS03130 (SNAG_0618) rpsR 575790..576029 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SNAG_RS03135 (SNAG_0619) - 576539..577048 (+) 510 WP_096406443.1 GNAT family N-acetyltransferase -
  SNAG_RS03140 (SNAG_0620) - 577130..578530 (+) 1401 WP_096406445.1 Cof-type HAD-IIB family hydrolase -
  SNAG_RS03145 (SNAG_0621) - 578532..578891 (+) 360 WP_000689613.1 S1 RNA-binding domain-containing protein -
  SNAG_RS03150 (SNAG_0622) - 578945..579694 (+) 750 WP_096406448.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SNAG_RS03155 (SNAG_0623) - 579684..579968 (+) 285 WP_096406451.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17196.10 Da        Isoelectric Point: 5.2065

>NTDB_id=68342 SNAG_RS03125 WP_000609596.1 575288..575758(+) (ssbA) [Streptococcus sp. NPS 308]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHTGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=68342 SNAG_RS03125 WP_000609596.1 575288..575758(+) (ssbA) [Streptococcus sp. NPS 308]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACTCGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGCGG
AGTGCGTGAAGGACATACAGGTGGGGCTTATTCTGCACCAACTGCAGGTCAATCAGCACCTGCAAACCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGCAACAAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139PWT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.603
  ssb Latilactobacillus sakei subsp. sakei 23K

52.841

100

0.596
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssb Neisseria gonorrhoeae MS11

33.714

100

0.378
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

67.949

0.372
  ssb Neisseria meningitidis MC58

32.571

100

0.365

Multiple sequence alignment