Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   M0696_RS18420 Genome accession   NZ_CP096590
Coordinates   3635885..3636226 (-) Length   113 a.a.
NCBI ID   WP_248602256.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3630885..3641226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS18405 (M0696_18405) - 3631132..3633900 (+) 2769 WP_248602253.1 DEAD/DEAH box helicase -
  M0696_RS18410 (M0696_18410) - 3634029..3634886 (-) 858 WP_248602254.1 Cof-type HAD-IIB family hydrolase -
  M0696_RS18415 (M0696_18415) glcR 3634892..3635668 (-) 777 WP_248602255.1 transcriptional regulator GlcR -
  M0696_RS18420 (M0696_18420) ssbB 3635885..3636226 (-) 342 WP_248602256.1 single-stranded DNA-binding protein SsbB Machinery gene
  M0696_RS18425 (M0696_18425) ywpG 3636303..3636686 (-) 384 WP_166847419.1 DynA interaction protein YwpG -
  M0696_RS18430 (M0696_18430) - 3636863..3637273 (+) 411 WP_248602257.1 YwpF-like family protein -
  M0696_RS18435 (M0696_18435) - 3637410..3638048 (-) 639 WP_222142181.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12419.13 Da        Isoelectric Point: 8.4694

>NTDB_id=681987 M0696_RS18420 WP_248602256.1 3635885..3636226(-) (ssbB) [Bacillus rugosus strain A78.1]
MFNQVMLVGRLTKDPELRYTSSGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAGGVIVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=681987 M0696_RS18420 WP_248602256.1 3635885..3636226(-) (ssbB) [Bacillus rugosus strain A78.1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGAGCTTCGCTACACTTCCTCCGGGGCGGCAGTCGC
ACACGTAACGCTCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAGGCCGATTACGTCAATTGCACGCTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGGCGGCGTTATCGTCTATGTAACGGAAGTATTGGCTGATACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

95.575

100

0.956
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.094

93.805

0.611
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398