Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MZK46_RS11080 Genome accession   NZ_CP096209
Coordinates   2057908..2058183 (-) Length   91 a.a.
NCBI ID   WP_318539024.1    Uniprot ID   -
Organism   Terribacillus saccharophilus strain ZY-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052908..2063183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZK46_RS11060 rpsT 2053383..2053649 (+) 267 WP_038561473.1 30S ribosomal protein S20 -
  MZK46_RS11065 holA 2053714..2054751 (-) 1038 WP_038561476.1 DNA polymerase III subunit delta -
  MZK46_RS11070 - 2055020..2057272 (-) 2253 WP_318539022.1 DNA internalization-related competence protein ComEC/Rec2 -
  MZK46_RS11075 - 2057269..2057841 (-) 573 WP_318539023.1 ComE operon protein 2 -
  MZK46_RS11080 comEA 2057908..2058183 (-) 276 WP_318539024.1 ComEA family DNA-binding protein Machinery gene
  MZK46_RS11085 - 2058225..2058515 (-) 291 WP_318539025.1 hypothetical protein -
  MZK46_RS11090 comER 2058611..2059435 (+) 825 WP_102707238.1 late competence protein ComER -
  MZK46_RS11095 - 2059486..2060244 (-) 759 WP_318539026.1 class I SAM-dependent methyltransferase -
  MZK46_RS11100 rsfS 2060244..2060600 (-) 357 WP_038561489.1 ribosome silencing factor -
  MZK46_RS11105 yqeK 2060601..2061173 (-) 573 WP_038561491.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MZK46_RS11110 - 2061160..2061729 (-) 570 WP_318539027.1 nicotinate-nucleotide adenylyltransferase -
  MZK46_RS11115 yhbY 2061741..2062031 (-) 291 WP_318539028.1 ribosome assembly RNA-binding protein YhbY -
  MZK46_RS11120 aroE 2062033..2062866 (-) 834 WP_318539029.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 9711.71 Da        Isoelectric Point: 3.7217

>NTDB_id=680453 MZK46_RS11080 WP_318539024.1 2057908..2058183(-) (comEA) [Terribacillus saccharophilus strain ZY-1]
MADEQVIYVAAIGEADVPVQTAGSSTSSEKININQADSEELTELNGIGEAKAQAIITFREENGPFTSIEQLTEVPGIGEK
SLENMKDQISL

Nucleotide


Download         Length: 276 bp        

>NTDB_id=680453 MZK46_RS11080 WP_318539024.1 2057908..2058183(-) (comEA) [Terribacillus saccharophilus strain ZY-1]
GTGGCGGATGAACAGGTTATCTATGTAGCGGCTATTGGTGAAGCAGATGTGCCTGTTCAAACAGCGGGTTCGAGTACTTC
CTCAGAGAAAATAAATATCAATCAAGCAGACAGCGAGGAACTGACAGAACTGAATGGCATTGGAGAAGCAAAAGCACAGG
CTATCATTACCTTCCGTGAGGAAAATGGTCCGTTCACTTCGATCGAGCAGCTTACAGAAGTACCTGGCATCGGAGAGAAA
TCATTAGAGAATATGAAGGATCAGATCAGCTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(28-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

49.505

100

0.549
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

44.211

100

0.462
  comEA Bacillus subtilis subsp. subtilis str. 168

43.75

100

0.462
  comEA/celA/cilE Streptococcus mitis SK321

43.158

100

0.451
  comEA/celA/cilE Streptococcus pneumoniae R6

41.053

100

0.429
  comEA/celA/cilE Streptococcus pneumoniae Rx1

41.053

100

0.429
  comEA/celA/cilE Streptococcus pneumoniae D39

41.053

100

0.429
  comEA/celA/cilE Streptococcus mitis NCTC 12261

40

100

0.418
  comEA Streptococcus thermophilus LMD-9

35.354

100

0.385
  comEA Vibrio cholerae C6706

56.452

68.132

0.385
  comEA Vibrio cholerae strain A1552

56.452

68.132

0.385
  comEA Latilactobacillus sakei subsp. sakei 23K

48.571

76.923

0.374
  comEA Vibrio campbellii strain DS40M4

40.244

90.11

0.363