Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   L8T27_RS17030 Genome accession   NZ_CP095743
Coordinates   3382227..3382571 (-) Length   114 a.a.
NCBI ID   WP_233315697.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3377227..3387571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS17000 (L8T27_017005) - 3377547..3378305 (-) 759 WP_233315691.1 WecB/TagA/CpsF family glycosyltransferase -
  L8T27_RS17005 (L8T27_017010) - 3378658..3378813 (+) 156 WP_233315692.1 anti-repressor SinI family protein -
  L8T27_RS17010 (L8T27_017015) galU 3378949..3379854 (-) 906 WP_233315693.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L8T27_RS17015 (L8T27_017020) - 3379927..3380850 (-) 924 WP_233315694.1 peptide ABC transporter permease -
  L8T27_RS17020 (L8T27_017025) - 3380843..3381724 (-) 882 WP_233315695.1 ABC transporter permease subunit -
  L8T27_RS17025 (L8T27_017030) - 3382027..3382188 (-) 162 WP_233315696.1 hypothetical protein -
  L8T27_RS17030 (L8T27_017035) ssbB 3382227..3382571 (-) 345 WP_233315697.1 single-stranded DNA-binding protein Machinery gene
  L8T27_RS17035 (L8T27_017040) - 3382788..3384524 (-) 1737 WP_233315698.1 phospho-sugar mutase -
  L8T27_RS17040 (L8T27_017045) - 3384646..3385155 (-) 510 WP_237941936.1 cupin domain-containing protein -
  L8T27_RS17045 (L8T27_017050) - 3385399..3387099 (+) 1701 WP_237941937.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 13208.15 Da        Isoelectric Point: 7.8121

>NTDB_id=678056 L8T27_RS17030 WP_233315697.1 3382227..3382571(-) (ssbB) [Niallia sp. Man26]
MINQVTLVGRLTRDPELKLTQGGTSVTNILLAVQRNYRNQAGEYEADFIPCIFWNKAAENIVHYCRKGFMIALIGRIQTR
NYENEEGKRVYVTEVVAEYVRFLEPKNQEQLIPT

Nucleotide


Download         Length: 345 bp        

>NTDB_id=678056 L8T27_RS17030 WP_233315697.1 3382227..3382571(-) (ssbB) [Niallia sp. Man26]
TTGATAAATCAGGTCACATTAGTAGGGAGATTGACCCGTGATCCTGAACTGAAGCTAACACAAGGAGGTACTTCTGTCAC
TAATATTTTGCTTGCAGTTCAGCGAAACTATCGCAATCAAGCAGGTGAGTACGAAGCAGATTTCATTCCGTGCATTTTCT
GGAACAAAGCAGCAGAAAATATCGTCCATTACTGCCGCAAAGGCTTTATGATAGCCTTAATCGGGAGAATCCAGACGAGA
AACTATGAAAATGAAGAAGGAAAAAGAGTTTATGTGACGGAAGTGGTTGCAGAATATGTTCGGTTTTTGGAACCGAAAAA
TCAAGAGCAGCTCATTCCAACATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.455

96.491

0.535
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.009

93.86

0.535
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

92.982

0.474
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.946

97.368

0.447
  ssbA Streptococcus mutans UA159

40.541

97.368

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

40.541

97.368

0.395
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.541

97.368

0.395
  ssbB/cilA Streptococcus mitis SK321

39.64

97.368

0.386
  ssbB/cilA Streptococcus pneumoniae Rx1

39.64

97.368

0.386
  ssbB/cilA Streptococcus pneumoniae D39

39.64

97.368

0.386
  ssbB/cilA Streptococcus pneumoniae R6

39.64

97.368

0.386
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.105

0.377