Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   L2Y97_RS06125 Genome accession   NZ_CP095742
Coordinates   1385658..1386098 (-) Length   146 a.a.
NCBI ID   WP_247434329.1    Uniprot ID   -
Organism   Luteibacter aegosomatissinici strain 353     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1375576..1393955 1385658..1386098 within 0


Gene organization within MGE regions


Location: 1375576..1393955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y97_RS06085 (L2Y97_06085) - 1375576..1376430 (+) 855 WP_247434307.1 glycosyltransferase family 2 protein -
  L2Y97_RS06090 (L2Y97_06090) - 1376423..1377622 (+) 1200 WP_247434310.1 glycosyltransferase -
  L2Y97_RS06095 (L2Y97_06095) - 1377571..1378497 (-) 927 WP_247434313.1 glycosyltransferase -
  L2Y97_RS06100 (L2Y97_06100) - 1378566..1379585 (+) 1020 WP_247434315.1 class I SAM-dependent methyltransferase -
  L2Y97_RS06105 (L2Y97_06105) - 1379582..1380478 (+) 897 WP_247434317.1 glycosyltransferase family 2 protein -
  L2Y97_RS06110 (L2Y97_06110) - 1380398..1381699 (-) 1302 WP_247434320.1 lipopolysaccharide biosynthesis protein -
  L2Y97_RS06115 (L2Y97_06115) - 1381696..1383567 (-) 1872 WP_247434323.1 hypothetical protein -
  L2Y97_RS06120 (L2Y97_06120) - 1383672..1385618 (-) 1947 WP_247434326.1 hypothetical protein -
  L2Y97_RS06125 (L2Y97_06125) pilA2 1385658..1386098 (-) 441 WP_247434329.1 pilin Machinery gene
  L2Y97_RS06130 (L2Y97_06130) pilA2 1386226..1386672 (-) 447 WP_247434332.1 pilin Machinery gene
  L2Y97_RS06135 (L2Y97_06135) - 1386960..1388303 (-) 1344 WP_247434335.1 glycosyltransferase family 39 protein -
  L2Y97_RS06140 (L2Y97_06140) - 1388414..1390510 (+) 2097 WP_247434338.1 S9 family peptidase -
  L2Y97_RS06145 (L2Y97_06145) - 1390582..1392861 (+) 2280 WP_247434340.1 hypothetical protein -
  L2Y97_RS06150 (L2Y97_06150) - 1393431..1393955 (+) 525 WP_247434343.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15169.47 Da        Isoelectric Point: 8.4515

>NTDB_id=677996 L2Y97_RS06125 WP_247434329.1 1385658..1386098(-) (pilA2) [Luteibacter aegosomatissinici strain 353]
MGKLPKGFTLVELMIVVAIIAILAAIAIPQYQDYTKRAKVSEGLLLADGAKWAVAETYGSKGVFPSTSNGAGYQTGSSTY
VSQVAVMAGGVIEVTYRHIDSDVDGKTFTLTPTASNGIILWSCNGLGGFGTPGTLSAKFLPATCRS

Nucleotide


Download         Length: 441 bp        

>NTDB_id=677996 L2Y97_RS06125 WP_247434329.1 1385658..1386098(-) (pilA2) [Luteibacter aegosomatissinici strain 353]
ATGGGCAAATTGCCGAAAGGCTTCACTCTCGTCGAATTGATGATAGTGGTGGCGATCATCGCCATCCTGGCTGCGATCGC
CATTCCGCAATATCAGGATTACACAAAGCGAGCCAAAGTGTCCGAGGGGCTCCTGCTGGCCGATGGAGCGAAGTGGGCTG
TCGCCGAGACGTATGGCTCGAAGGGCGTGTTCCCGTCAACGAGCAATGGAGCAGGCTACCAGACGGGTAGCAGCACTTAC
GTCAGCCAGGTGGCGGTCATGGCAGGCGGCGTCATTGAGGTCACCTACCGTCATATCGACAGCGATGTTGATGGTAAAAC
CTTTACGCTGACGCCAACCGCGAGCAATGGCATCATCTTATGGAGTTGCAACGGCCTAGGCGGCTTCGGCACGCCAGGCA
CCCTGAGCGCCAAGTTCCTGCCCGCTACATGTCGTAGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-27)

Pilin (bacterial filament) (Pilin)

(37-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

52.113

97.26

0.507
  pilA2 Legionella pneumophila strain ERS1305867

52.113

97.26

0.507
  pilA Ralstonia pseudosolanacearum GMI1000

40.237

100

0.466
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.574

100

0.445
  pilE Neisseria gonorrhoeae MS11

39.13

100

0.432
  pilE Neisseria gonorrhoeae strain FA1090

38.994

100

0.425
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.497

100

0.418
  comP Acinetobacter baylyi ADP1

40

100

0.411
  pilA/pilA1 Eikenella corrodens VA1

37.107

100

0.404
  pilA Pseudomonas aeruginosa PAK

36.875

100

0.404
  pilA Glaesserella parasuis strain SC1401

40.602

91.096

0.37