Detailed information NTG0677487

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: MXB02_RS24855
• Genome accession: NZ_CP095556
• Coordinates: 5366546..5367751 (-)
• Length: 401 a.a.
• NCBI ID: WP_088852014.1
• Uniprot ID: -
• Organism: Pseudomonas mosselii strain 923
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	5368718..5379633	5366546..5367751	flank	967

Gene organization within MGE regions

Location: 5366546..5379633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MXB02_RS24855 (MXB02_24855)	pilQ	5366546..5367751 (-)	1206	WP_088852014.1	secretin N-terminal domain-containing protein	Machinery gene
MXB02_RS24860 (MXB02_24860)	-	5367708..5368721 (-)	1014	WP_197866432.1	pilus assembly protein PilP	-
MXB02_RS24865 (MXB02_24865)	-	5368718..5369257 (-)	540	WP_062362842.1	PilN domain-containing protein	-
MXB02_RS24870 (MXB02_24870)	pilM	5369254..5370150 (-)	897	WP_062362838.1	pilus assembly protein PilM	-
MXB02_RS24875 (MXB02_24875)	-	5370317..5372770 (+)	2454	WP_062362835.1	penicillin-binding protein 1A	-
MXB02_RS24880 (MXB02_24880)	-	5372866..5374134 (-)	1269	WP_028689114.1	malic enzyme-like NAD(P)-binding protein	-
MXB02_RS24885 (MXB02_24885)	-	5374314..5375135 (-)	822	WP_247283747.1	thermonuclease family protein	-
MXB02_RS24890 (MXB02_24890)	rpmE	5375138..5375353 (-)	216	WP_011531746.1	50S ribosomal protein L31	-
MXB02_RS24895 (MXB02_24895)	-	5375523..5377742 (+)	2220	WP_247283748.1	primosomal protein N'	-
MXB02_RS24900 (MXB02_24900)	argS	5377897..5379633 (+)	1737	WP_028689117.1	arginine--tRNA ligase	-

Sequence

Protein

• Length: 401 a.a.
• Molecular weight: 43437.87 Da
• Isoelectric Point: 4.9947

>NTDB_id=677487 MXB02_RS24855 WP_088852014.1 5366546..5367751(-) (pilQ) [Pseudomonas mosselii strain 923]
MLGLQATQAETFQGEPMSLNLQDVELRSVLQVMADHAGVNLVVGDSVQGRITLRLEDVPWEQALDLVLRSKGLGRRREGN
VLLVAPVAELAGQVQGIEPLQRELIPVFHAKAGELAELLLASLADDGALAGRGSLSVDARTNTLVATQPAARLAELRRLV
TQLDVPVRQVMIEARIVEANVDYEKALGVRWGGPLYGSDRRLGSDLFVDLGVERGGAALGVGLLRSDILLDLELSAMEKS
GNGEIISQPKVVTADKETARILKGTEVPYQETTRSGATSVSFREASLSLEVTPQITPDGKVIMAVRVTKDEPDFINALND
VPPIRKNEVNAKVRVTDGQTIVIGGVYSTSQNKVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSDQAIAVS
R

Nucleotide

• Length: 1206 bp

>NTDB_id=677487 MXB02_RS24855 WP_088852014.1 5366546..5367751(-) (pilQ) [Pseudomonas mosselii strain 923]
ATGCTGGGGCTTCAGGCGACGCAGGCCGAGACGTTTCAGGGTGAGCCGATGTCGCTCAACCTCCAGGACGTCGAGCTGCG
TTCGGTGCTTCAGGTCATGGCCGATCACGCGGGCGTCAACCTGGTGGTCGGCGACTCGGTGCAGGGACGGATTACCCTGC
GCCTGGAAGACGTGCCCTGGGAGCAGGCGCTTGATCTGGTGCTGCGCAGCAAGGGCTTGGGCAGGCGCCGGGAGGGGAAT
GTGCTGCTGGTTGCTCCTGTGGCAGAGCTCGCTGGGCAGGTCCAGGGCATCGAGCCACTGCAGCGTGAATTGATCCCTGT
CTTCCATGCCAAGGCCGGCGAGCTGGCGGAGCTGCTGCTGGCGAGCCTGGCGGACGACGGTGCCCTGGCCGGGCGTGGCA
GCCTCAGTGTGGACGCTCGCACCAATACCCTGGTAGCCACCCAGCCTGCCGCGCGGCTCGCCGAACTGCGCAGGCTGGTC
ACTCAGCTGGATGTGCCGGTGCGCCAGGTCATGATCGAGGCACGGATCGTCGAGGCCAATGTCGATTACGAAAAGGCCCT
GGGCGTGCGCTGGGGTGGACCGCTGTATGGCTCGGACCGCCGGCTGGGCAGCGACCTTTTCGTCGATCTTGGCGTCGAGC
GGGGAGGTGCCGCGTTGGGAGTGGGGCTGCTGCGCAGCGATATCCTGCTCGATCTGGAGCTCAGCGCCATGGAAAAAAGC
GGCAATGGCGAGATCATCTCCCAACCCAAGGTGGTCACGGCCGACAAGGAAACCGCGCGCATACTCAAGGGCACCGAAGT
GCCCTACCAGGAAACCACCCGCAGTGGCGCCACTTCGGTCTCCTTCCGAGAGGCGTCCCTGTCGCTGGAGGTGACGCCGC
AGATCACGCCGGACGGCAAGGTGATCATGGCGGTGCGGGTGACCAAGGACGAGCCGGACTTCATCAATGCCCTCAACGAT
GTGCCGCCGATCCGCAAGAACGAAGTCAACGCCAAGGTGCGGGTCACCGATGGGCAGACCATTGTGATTGGTGGCGTGTA
CTCGACGTCGCAGAACAAAGTGGTCGACAAGGTGCCATTTTTTGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCG
ATGCATTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGT
CGTTGA

Domains

Predicted by InterproScan.

• Secretin and TonB N terminus short domain (STN) (39-86)

• Bacterial type II/III secretion system short domain (Secretin_N) (104-169)

• Bacterial type II and III secretion system protein (Secretin) (236-392)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	57.11	100	0.621
comQ	Acinetobacter baylyi ADP1	42.163	100	0.476
pilQ	Acinetobacter baumannii D1279779	41.087	100	0.471
pilQ	Acinetobacter baumannii strain A118	41.087	100	0.471
pilQ	Legionella pneumophila strain ERS1305867	43.365	100	0.456
pilQ	Legionella pneumophila strain Lp02	43.365	100	0.456
pilQ	Vibrio campbellii strain DS40M4	40.094	100	0.424
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	40.144	100	0.416
pilQ	Vibrio cholerae strain A1552	40.144	100	0.416
pilQ	Neisseria meningitidis M1080	35.461	100	0.374
pilQ	Neisseria gonorrhoeae strain FA1090	35.071	100	0.369
pilQ	Neisseria meningitidis MC58	34.834	100	0.367