Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MW696_RS12980 Genome accession   NZ_CP095476
Coordinates   2514631..2514972 (-) Length   113 a.a.
NCBI ID   WP_247069676.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2509631..2519972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS12955 (MW696_12960) ureA 2510135..2510452 (+) 318 WP_247069673.1 urease subunit gamma -
  MW696_RS12960 (MW696_12965) ureB 2510449..2510823 (+) 375 WP_048354071.1 urease subunit beta -
  MW696_RS12965 (MW696_12970) ureC 2510820..2512529 (+) 1710 WP_247069674.1 urease subunit alpha -
  MW696_RS12970 (MW696_12975) - 2512730..2513602 (-) 873 WP_048354073.1 Cof-type HAD-IIB family hydrolase -
  MW696_RS12975 (MW696_12980) - 2513630..2514388 (-) 759 WP_048354074.1 DeoR/GlpR family DNA-binding transcription regulator -
  MW696_RS12980 (MW696_12985) ssbB 2514631..2514972 (-) 342 WP_247069676.1 single-stranded DNA-binding protein Machinery gene
  MW696_RS12985 (MW696_12990) - 2515075..2515449 (-) 375 WP_247069678.1 hypothetical protein -
  MW696_RS12990 (MW696_12995) - 2515625..2516038 (+) 414 WP_048354077.1 YwpF-like family protein -
  MW696_RS12995 (MW696_13000) mscL 2516072..2516458 (-) 387 WP_048354078.1 large conductance mechanosensitive channel protein MscL -
  MW696_RS13000 (MW696_13005) fabZ 2516528..2516962 (-) 435 WP_048354079.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MW696_RS13005 (MW696_13010) - 2517147..2517974 (-) 828 WP_048354080.1 flagellar hook-basal body protein -
  MW696_RS13010 (MW696_13015) - 2518003..2518842 (-) 840 WP_247069680.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12595.34 Da        Isoelectric Point: 9.1240

>NTDB_id=677168 MW696_RS12980 WP_247069676.1 2514631..2514972(-) (ssbB) [Bacillus glycinifermentans strain MGMM1]
MFNHIMLVGRLTKDPELRYTSDGVPVANITLAVSRHFKNAAGDIETDFINCTLWRKTAENTADYCKKGSIVGLNGRLQTR
NYVNSEGNRVFITEVVARSVHFLGGKPREPADV

Nucleotide


Download         Length: 342 bp        

>NTDB_id=677168 MW696_RS12980 WP_247069676.1 2514631..2514972(-) (ssbB) [Bacillus glycinifermentans strain MGMM1]
ATGTTTAACCACATTATGCTGGTCGGGCGTTTAACGAAGGACCCGGAGCTTCGGTATACATCTGACGGTGTCCCCGTTGC
CAATATCACCCTGGCCGTCAGCAGGCATTTCAAAAATGCCGCGGGCGACATTGAGACGGACTTCATCAATTGCACGCTGT
GGAGAAAAACGGCCGAAAACACAGCCGATTACTGCAAAAAAGGTTCAATCGTCGGATTGAACGGCAGGCTTCAAACGCGC
AACTACGTTAATTCAGAAGGCAACCGCGTCTTTATAACAGAAGTCGTCGCCCGCTCCGTTCATTTTTTGGGCGGGAAACC
CCGCGAGCCCGCAGATGTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.568

98.23

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

93.805

0.584
  ssb Latilactobacillus sakei subsp. sakei 23K

58.252

91.15

0.531
  ssbA Streptococcus mutans UA159

39.815

95.575

0.381
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.815

95.575

0.381
  ssb Vibrio cholerae strain A1552

37.719

100

0.381
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381
  ssb Neisseria meningitidis MC58

38.318

94.69

0.363
  ssb Neisseria gonorrhoeae MS11

38.318

94.69

0.363
  ssbB/cilA Streptococcus mitis NCTC 12261

37.963

95.575

0.363
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.963

95.575

0.363