Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MWG54_RS10455 Genome accession   NZ_CP095377
Coordinates   2013479..2013814 (+) Length   111 a.a.
NCBI ID   WP_061655194.1    Uniprot ID   A0AAX2GB04
Organism   Bacillus cereus strain SEM-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2008479..2018814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWG54_RS10430 (MWG54_10430) - 2008718..2009500 (-) 783 WP_000499720.1 hypothetical protein -
  MWG54_RS10435 (MWG54_10435) - 2009610..2010257 (+) 648 WP_000165966.1 HD domain-containing protein -
  MWG54_RS10440 (MWG54_10440) - 2010254..2012149 (+) 1896 WP_000783178.1 ABC-F family ATP-binding cassette domain-containing protein -
  MWG54_RS10445 (MWG54_10445) - 2012225..2012956 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  MWG54_RS10450 (MWG54_10450) - 2013063..2013317 (+) 255 WP_000975130.1 DUF4318 domain-containing protein -
  MWG54_RS10455 (MWG54_10455) ssbA 2013479..2013814 (+) 336 WP_061655194.1 single-stranded DNA-binding protein Machinery gene
  MWG54_RS10460 (MWG54_10460) - 2014152..2014712 (-) 561 WP_246962617.1 AAA family ATPase -
  MWG54_RS10465 (MWG54_10465) ltrA 2015467..2017128 (+) 1662 WP_246961332.1 group II intron reverse transcriptase/maturase -
  MWG54_RS10470 (MWG54_10470) - 2017413..2018540 (+) 1128 WP_061655195.1 conserved virulence factor C family protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12785.64 Da        Isoelectric Point: 9.4344

>NTDB_id=676583 MWG54_RS10455 WP_061655194.1 2013479..2013814(+) (ssbA) [Bacillus cereus strain SEM-15]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLIGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=676583 MWG54_RS10455 WP_061655194.1 2013479..2013814(+) (ssbA) [Bacillus cereus strain SEM-15]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTTGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTCATTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

95.495

0.523
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

100

0.505
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

94.595

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

99.099

0.423
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396