Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA11_RS08115 Genome accession   NZ_CP094808
Coordinates   1686798..1687217 (-) Length   139 a.a.
NCBI ID   WP_262625159.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6212     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1657776..1699979 1686798..1687217 within 0


Gene organization within MGE regions


Location: 1657776..1699979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA11_RS07925 (MUA11_07915) - 1657776..1659245 (-) 1470 WP_262625136.1 peptidoglycan DD-metalloendopeptidase family protein -
  MUA11_RS07930 (MUA11_07920) - 1659247..1659495 (-) 249 WP_194747456.1 phage holin -
  MUA11_RS07935 (MUA11_07925) - 1659634..1659978 (-) 345 WP_060551317.1 hypothetical protein -
  MUA11_RS07940 (MUA11_07930) - 1660026..1660340 (-) 315 WP_194747458.1 hypothetical protein -
  MUA11_RS07945 (MUA11_07935) - 1660383..1660532 (-) 150 WP_194747460.1 hypothetical protein -
  MUA11_RS07950 (MUA11_07940) - 1660543..1664025 (-) 3483 WP_262625137.1 phage tail spike protein -
  MUA11_RS07955 (MUA11_07945) - 1664027..1665514 (-) 1488 WP_262625138.1 phage tail family protein -
  MUA11_RS07960 (MUA11_07950) - 1666261..1670316 (-) 4056 Protein_1537 phage tail tape measure protein -
  MUA11_RS07965 (MUA11_07955) gpGT 1670333..1670476 (-) 144 WP_262608247.1 phage tail assembly chaperone GT -
  MUA11_RS07970 (MUA11_07960) gpG 1670536..1670907 (-) 372 WP_262608248.1 phage tail assembly chaperone G -
  MUA11_RS07975 (MUA11_07965) - 1670967..1671146 (-) 180 WP_107371937.1 hypothetical protein -
  MUA11_RS07980 (MUA11_07970) - 1671167..1671790 (-) 624 WP_262608250.1 major tail protein -
  MUA11_RS07985 (MUA11_07975) - 1671803..1672213 (-) 411 WP_262625140.1 hypothetical protein -
  MUA11_RS07990 (MUA11_07980) - 1672219..1672608 (-) 390 WP_262608252.1 hypothetical protein -
  MUA11_RS07995 (MUA11_07985) - 1672598..1672966 (-) 369 WP_262608254.1 hypothetical protein -
  MUA11_RS08000 (MUA11_07990) - 1672950..1673237 (-) 288 WP_262608255.1 phage gp6-like head-tail connector protein -
  MUA11_RS08005 (MUA11_07995) - 1673255..1674463 (-) 1209 WP_262625141.1 phage major capsid protein -
  MUA11_RS08010 (MUA11_08000) - 1674475..1675188 (-) 714 WP_262625142.1 head maturation protease, ClpP-related -
  MUA11_RS08015 (MUA11_08005) - 1675151..1676329 (-) 1179 WP_262625143.1 phage portal protein -
  MUA11_RS08020 (MUA11_08010) - 1676349..1678016 (-) 1668 WP_262625144.1 terminase TerL endonuclease subunit -
  MUA11_RS08025 (MUA11_08015) - 1678003..1678385 (-) 383 Protein_1550 hypothetical protein -
  MUA11_RS08030 (MUA11_08020) - 1678534..1678848 (-) 315 WP_262608260.1 HNH endonuclease -
  MUA11_RS08035 (MUA11_08025) - 1679131..1679526 (-) 396 WP_262625145.1 hypothetical protein -
  MUA11_RS08040 (MUA11_08030) - 1679792..1679980 (-) 189 WP_262625146.1 hypothetical protein -
  MUA11_RS08045 (MUA11_08035) - 1680243..1680542 (-) 300 WP_165805114.1 MazG-like family protein -
  MUA11_RS08050 (MUA11_08040) - 1680690..1681049 (-) 360 WP_262608263.1 thermonuclease family protein -
  MUA11_RS08055 (MUA11_08045) - 1681056..1681292 (-) 237 WP_262625147.1 hypothetical protein -
  MUA11_RS08060 (MUA11_08050) - 1681296..1681511 (-) 216 WP_262625148.1 hypothetical protein -
  MUA11_RS08065 (MUA11_08055) - 1681498..1681749 (-) 252 WP_262625149.1 hypothetical protein -
  MUA11_RS08070 (MUA11_08060) - 1681737..1682141 (-) 405 WP_262625150.1 YopX family protein -
  MUA11_RS08075 (MUA11_08065) - 1682138..1682800 (-) 663 WP_262625151.1 hypothetical protein -
  MUA11_RS08080 (MUA11_08070) - 1682910..1683125 (-) 216 WP_262625152.1 DUF3269 family protein -
  MUA11_RS08085 (MUA11_08075) - 1683310..1683741 (-) 432 WP_262625153.1 hypothetical protein -
  MUA11_RS08090 (MUA11_08080) - 1683743..1684159 (-) 417 WP_262625154.1 RusA family crossover junction endodeoxyribonuclease -
  MUA11_RS08100 (MUA11_08090) - 1684323..1685108 (-) 786 WP_262625156.1 ATP-binding protein -
  MUA11_RS08105 (MUA11_08095) - 1685109..1685879 (-) 771 WP_262625157.1 conserved phage C-terminal domain-containing protein -
  MUA11_RS08110 (MUA11_08100) - 1686115..1686786 (-) 672 WP_262625158.1 putative HNHc nuclease -
  MUA11_RS08115 (MUA11_08105) ssbA 1686798..1687217 (-) 420 WP_262625159.1 single-stranded DNA-binding protein Machinery gene
  MUA11_RS08120 (MUA11_08110) - 1687210..1687854 (-) 645 WP_262625160.1 ERF family protein -
  MUA11_RS08125 (MUA11_08115) - 1687851..1688069 (-) 219 WP_262608279.1 DUF2483 domain-containing protein -
  MUA11_RS08130 (MUA11_08120) - 1688066..1688332 (-) 267 WP_262625161.1 DUF1108 family protein -
  MUA11_RS08135 (MUA11_08125) - 1688587..1688913 (-) 327 WP_262625162.1 DUF771 domain-containing protein -
  MUA11_RS08140 (MUA11_08130) - 1689061..1689378 (+) 318 WP_096540483.1 hypothetical protein -
  MUA11_RS08145 (MUA11_08135) - 1689362..1689628 (-) 267 WP_262625163.1 DUF2829 domain-containing protein -
  MUA11_RS08150 (MUA11_08140) tscA 1689663..1689887 (-) 225 WP_107362097.1 type II toxin-antitoxin system antitoxin TscA -
  MUA11_RS08155 (MUA11_08145) - 1689887..1690387 (-) 501 WP_262625164.1 ORF6C domain-containing protein -
  MUA11_RS08160 (MUA11_08150) - 1690400..1691281 (-) 882 WP_262625165.1 DUF3102 domain-containing protein -
  MUA11_RS08165 (MUA11_08155) - 1691320..1691529 (-) 210 WP_217845906.1 helix-turn-helix transcriptional regulator -
  MUA11_RS08170 (MUA11_08160) - 1691695..1692024 (+) 330 WP_262625166.1 helix-turn-helix transcriptional regulator -
  MUA11_RS08175 (MUA11_08165) - 1692048..1692506 (+) 459 WP_262625167.1 toxin -
  MUA11_RS08180 (MUA11_08170) - 1692554..1693132 (+) 579 WP_262625168.1 hypothetical protein -
  MUA11_RS08185 (MUA11_08175) - 1694127..1694780 (+) 654 WP_262569499.1 CPBP family intramembrane glutamic endopeptidase -
  MUA11_RS08190 (MUA11_08180) - 1694849..1695874 (+) 1026 WP_262608289.1 site-specific integrase -
  MUA11_RS08200 (MUA11_08190) - 1697889..1699049 (-) 1161 WP_262625170.1 MFS transporter -
  MUA11_RS08205 (MUA11_08195) - 1699620..1699979 (+) 360 WP_262625171.1 complement inhibitor SCIN family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15567.14 Da        Isoelectric Point: 4.9221

>NTDB_id=672990 MUA11_RS08115 WP_262625159.1 1686798..1687217(-) (ssbA) [Staphylococcus agnetis strain IVB6212]
MLNRAVLVGRLTKDPEFRTTPSGVDVSTFTLAVNRNFKSKDGEQQADFINCVVFRKQAENVKNYLSKGSLAGVDGRLQSR
SYENKEGQRVYVTEVVCDSVQFLEPKNNGQSNNQTKQQQGQAQDNPFDNASIDDDDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=672990 MUA11_RS08115 WP_262625159.1 1686798..1687217(-) (ssbA) [Staphylococcus agnetis strain IVB6212]
ATGCTTAACAGAGCCGTATTAGTAGGACGATTAACAAAAGACCCTGAATTCAGAACGACGCCATCAGGCGTAGACGTATC
AACTTTCACACTTGCAGTAAATCGCAATTTCAAAAGTAAAGACGGAGAACAACAAGCTGACTTTATTAATTGCGTAGTAT
TCCGAAAGCAAGCTGAAAACGTTAAAAACTATTTAAGTAAAGGGAGTTTAGCAGGCGTTGATGGGCGACTGCAGTCACGA
AGCTATGAAAATAAAGAAGGACAACGTGTGTATGTAACGGAAGTTGTGTGCGACAGTGTGCAATTTTTAGAACCTAAAAA
TAATGGTCAATCCAACAATCAAACTAAACAACAACAAGGGCAAGCGCAGGATAATCCTTTTGATAACGCTAGTATCGATG
ATGACGATTTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.604
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

76.259

0.446
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.781

100

0.439
  ssbA Streptococcus mutans UA159

42.446

100

0.424
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.129

100

0.381
  ssbB/cilA Streptococcus mitis NCTC 12261

38.129

100

0.381
  ssb Vibrio cholerae strain A1552

30.233

100

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

37.41

100

0.374
  ssbB/cilA Streptococcus pneumoniae D39

37.41

100

0.374
  ssbB/cilA Streptococcus pneumoniae R6

37.41

100

0.374
  ssbB/cilA Streptococcus mitis SK321

37.41

100

0.374