Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG957_RS22885 Genome accession   NZ_CP109174
Coordinates   5132492..5133904 (-) Length   470 a.a.
NCBI ID   WP_327125567.1    Uniprot ID   A0ABV2U8D0
Organism   Streptomyces sp. NBC_01718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5127492..5138904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG957_RS22865 (OG957_22875) - 5127679..5128329 (-) 651 WP_327125570.1 SigE family RNA polymerase sigma factor -
  OG957_RS22870 (OG957_22880) - 5128506..5129405 (-) 900 WP_327125569.1 A/G-specific adenine glycosylase -
  OG957_RS22875 (OG957_22885) - 5130269..5131078 (+) 810 WP_327125568.1 hypothetical protein -
  OG957_RS22880 (OG957_22890) disA 5131287..5132411 (-) 1125 WP_030972387.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG957_RS22885 (OG957_22895) radA/sms 5132492..5133904 (-) 1413 WP_327125567.1 DNA repair protein RadA Machinery gene
  OG957_RS22890 (OG957_22900) - 5134094..5135920 (+) 1827 WP_371795895.1 hypothetical protein -
  OG957_RS22895 (OG957_22905) - 5135952..5136821 (-) 870 WP_327125565.1 hypothetical protein -
  OG957_RS22900 (OG957_22910) - 5136862..5137809 (+) 948 WP_371795896.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49638.81 Da        Isoelectric Point: 8.2633

>NTDB_id=672065 OG957_RS22885 WP_327125567.1 5132492..5133904(-) (radA/sms) [Streptomyces sp. NBC_01718]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLFLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPPGMKVTEVANMGDALRVLPRRSRTEPPREADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=672065 OG957_RS22885 WP_327125567.1 5132492..5133904(-) (radA/sms) [Streptomyces sp. NBC_01718]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACGACGGCGGCCG
GCCGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTGGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
ACTCCTGCTGGATGTGGCCGCCAAGGCCGCCAGTGACGAGCACCGCACCCTCTACGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCCATCAACGACCACCTCTTCCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCACCCGAGATCGAAGG
CGCACCCGGCGGGATGGCACAGGTCCGGGAGGTGGCCGGTGCGCTCATCCGCGCTTCCAAGGAGCGTGGCATGTCCACGC
TCCTGGTCGGTCATGTCACCAAGGACGGCGCGATCGCCGGGCCGCGGCTGCTGGAGCACCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCATGCGCGCCTCCGGCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGTCCGGCCTCTTCCTCACCCGGCGCGACGAACCCGTGC
CGGGCACCTGCCTGACGGTCACATTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCCTCACCACGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTGGCAGTTCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAACGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTTTCCGAACCCGCCGCGGACC
TTGCGATCGCACTCGCGCTGGCCAGTGCGGCGAGCGACACACCACTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTTACGGGGGTGCAGCGCAGACTGGCCGAAGCACACCGCCTGGGCTTCACCCACGCGCT
GGTCCCGACCGACCCGGGGAAGGTTCCACCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTGAGAGTGC
TCCCGCGCCGGTCTCGTACAGAGCCCCCACGGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus mitis NCTC 12261

42.605

96.383

0.411
  radA Streptococcus mitis SK321

42.605

96.383

0.411
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406