Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MQW34_RS11270 Genome accession   NZ_CP094455
Coordinates   2171785..2172120 (+) Length   111 a.a.
NCBI ID   WP_243500428.1    Uniprot ID   -
Organism   Bacillus sp. ZJS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2149923..2172120 2171785..2172120 within 0


Gene organization within MGE regions


Location: 2149923..2172120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQW34_RS11165 (MQW34_11170) - 2149923..2150873 (-) 951 Protein_2122 tyrosine-type recombinase/integrase -
  MQW34_RS11170 (MQW34_11175) - 2150815..2151120 (+) 306 WP_243500822.1 hypothetical protein -
  MQW34_RS11175 (MQW34_11180) - 2151769..2153103 (-) 1335 WP_243500412.1 BclA C-terminal domain-containing protein -
  MQW34_RS11180 (MQW34_11185) - 2153725..2154234 (-) 510 WP_243500414.1 hypothetical protein -
  MQW34_RS11185 (MQW34_11190) - 2156285..2156455 (+) 171 WP_210627249.1 hypothetical protein -
  MQW34_RS11190 (MQW34_11195) - 2156482..2156964 (+) 483 WP_210627248.1 ArpU family phage packaging/lysis transcriptional regulator -
  MQW34_RS11195 (MQW34_11200) - 2156964..2157506 (+) 543 WP_210627247.1 site-specific integrase -
  MQW34_RS11200 (MQW34_11205) - 2157721..2158671 (+) 951 WP_210627246.1 nucleoside hydrolase -
  MQW34_RS11205 (MQW34_11210) - 2159482..2160651 (+) 1170 WP_243500417.1 serine hydrolase domain-containing protein -
  MQW34_RS11210 (MQW34_11215) - 2161144..2161449 (-) 306 WP_163255229.1 WGxxGxxG family protein -
  MQW34_RS11215 (MQW34_11220) - 2161789..2162304 (+) 516 Protein_2132 DUF3231 family protein -
  MQW34_RS11220 (MQW34_11230) - 2162964..2163101 (-) 138 WP_000443221.1 DUF3956 domain-containing protein -
  MQW34_RS11225 (MQW34_11235) - 2163389..2163931 (+) 543 WP_210626796.1 site-specific integrase -
  MQW34_RS11230 (MQW34_11240) - 2164340..2164516 (+) 177 WP_210626795.1 hypothetical protein -
  MQW34_RS11235 (MQW34_11245) terS 2164541..2165208 (+) 668 Protein_2136 phage terminase small subunit -
  MQW34_RS11240 (MQW34_11250) - 2165297..2166397 (+) 1101 Protein_2137 aspartate phosphatase -
  MQW34_RS29685 - 2166394..2166610 (+) 217 Protein_2138 hypothetical protein -
  MQW34_RS11245 (MQW34_11255) - 2167011..2167808 (-) 798 WP_243500421.1 hypothetical protein -
  MQW34_RS11250 (MQW34_11260) - 2167918..2168565 (+) 648 WP_243500423.1 HD domain-containing protein -
  MQW34_RS11255 (MQW34_11265) - 2168562..2170457 (+) 1896 WP_243500426.1 ABC-F family ATP-binding cassette domain-containing protein -
  MQW34_RS11260 (MQW34_11270) - 2170533..2171264 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family membrane protein -
  MQW34_RS11265 (MQW34_11275) - 2171372..2171626 (+) 255 WP_078419984.1 DUF4318 domain-containing protein -
  MQW34_RS11270 (MQW34_11280) ssbA 2171785..2172120 (+) 336 WP_243500428.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12765.61 Da        Isoelectric Point: 9.0926

>NTDB_id=669640 MQW34_RS11270 WP_243500428.1 2171785..2172120(+) (ssbA) [Bacillus sp. ZJS3]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTR
NYEDDQGKRIYVTEVVIESITFLEKRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=669640 MQW34_RS11270 WP_243500428.1 2171785..2172120(+) (ssbA) [Bacillus sp. ZJS3]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAGCAAGTAGATTTTATTAATTGCGTCGTAT
GGAGAAGGTCAGCTGAAAATGTAACGGAATATTGTACGAAAGGTTCACTTGTTGGAATTACTGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATGTAACGGAAGTTGTGATTGAGAGTATTACATTTTTGGAGAAAAGGCG
GGAGGGTGCATCATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

95.495

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.364

99.099

0.459
  ssbA Streptococcus mutans UA159

44.545

99.099

0.441
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.545

99.099

0.441
  ssbB/cilA Streptococcus pneumoniae Rx1

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae D39

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae R6

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis SK321

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbB/cilA Streptococcus mitis NCTC 12261

42.727

99.099

0.423

Multiple sequence alignment