Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MP387_RS02880 Genome accession   NZ_CP094226
Coordinates   578309..578779 (+) Length   156 a.a.
NCBI ID   WP_242747550.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 573309..583779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS02855 (MP387_02855) - 573380..573856 (+) 477 WP_000776858.1 DUF5590 domain-containing protein -
  MP387_RS02860 (MP387_02860) - 573866..575044 (+) 1179 WP_242747548.1 pyridoxal phosphate-dependent aminotransferase -
  MP387_RS02865 (MP387_02865) asnS 575194..576540 (+) 1347 WP_242748032.1 asparagine--tRNA ligase -
  MP387_RS02870 (MP387_02870) - 576666..577871 (+) 1206 WP_070683872.1 MFS transporter -
  MP387_RS02875 (MP387_02875) rpsF 578007..578297 (+) 291 WP_002896497.1 30S ribosomal protein S6 -
  MP387_RS02880 (MP387_02880) ssbA 578309..578779 (+) 471 WP_242747550.1 single-stranded DNA-binding protein SsbA Machinery gene
  MP387_RS02885 (MP387_02885) rpsR 578811..579050 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  MP387_RS02890 (MP387_02890) - 579382..579891 (+) 510 WP_242747552.1 GNAT family N-acetyltransferase -
  MP387_RS02895 (MP387_02895) wecB 580329..581486 (+) 1158 WP_242747554.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -
  MP387_RS02900 (MP387_02900) - 581483..582262 (+) 780 WP_242747556.1 hypothetical protein -
  MP387_RS02905 (MP387_02905) - 582404..583714 (+) 1311 WP_242747558.1 glycosyltransferase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17196.10 Da        Isoelectric Point: 5.2065

>NTDB_id=668098 MP387_RS02880 WP_242747550.1 578309..578779(+) (ssbA) [Streptococcus oralis strain 1648]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHSGGAYSAPTAGQSAPANPVPDFSRSENPFAATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=668098 MP387_RS02880 WP_242747550.1 578309..578779(+) (ssbA) [Streptococcus oralis strain 1648]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGCGG
AGTGCGCGAAGGACATTCAGGTGGAGCTTATTCTGCACCAACTGCTGGCCAATCAGCACCTGCAAACCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGCAGCAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.603
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssb Neisseria meningitidis MC58

33.143

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

67.949

0.372

Multiple sequence alignment