Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   MP387_RS01820 Genome accession   NZ_CP094226
Coordinates   380482..380877 (+) Length   131 a.a.
NCBI ID   WP_000282459.1    Uniprot ID   A0A1X1GBD7
Organism   Streptococcus oralis strain 1648     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 375482..385877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS01790 (MP387_01790) rpoE 375652..376242 (+) 591 WP_000418417.1 DNA-directed RNA polymerase subunit delta -
  MP387_RS01795 (MP387_01795) - 376561..378168 (+) 1608 WP_084877510.1 CTP synthase -
  MP387_RS01800 (MP387_01800) - 378345..378644 (+) 300 WP_242747251.1 DUF4651 domain-containing protein -
  MP387_RS01805 (MP387_01805) - 378641..378958 (+) 318 WP_049505072.1 thioredoxin family protein -
  MP387_RS01810 (MP387_01810) ytpR 378974..379600 (+) 627 WP_242747253.1 YtpR family tRNA-binding protein -
  MP387_RS01815 (MP387_01815) - 379642..380403 (+) 762 WP_242747255.1 SDR family NAD(P)-dependent oxidoreductase -
  MP387_RS01820 (MP387_01820) ssbB/cilA 380482..380877 (+) 396 WP_000282459.1 single-stranded DNA-binding protein Machinery gene
  MP387_RS01825 (MP387_01825) groES 381034..381318 (+) 285 WP_000917326.1 co-chaperone GroES -
  MP387_RS01830 (MP387_01830) groL 381334..382956 (+) 1623 WP_242747257.1 chaperonin GroEL -
  MP387_RS01835 (MP387_01835) - 383082..383849 (+) 768 WP_242747259.1 epoxyqueuosine reductase QueH -
  MP387_RS01840 (MP387_01840) - 383920..384453 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  MP387_RS01845 (MP387_01845) recX 384542..385318 (-) 777 WP_242747261.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.79 Da        Isoelectric Point: 5.9409

>NTDB_id=668094 MP387_RS01820 WP_000282459.1 380482..380877(+) (ssbB/cilA) [Streptococcus oralis strain 1648]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=668094 MP387_RS01820 WP_000282459.1 380482..380877(+) (ssbB/cilA) [Streptococcus oralis strain 1648]
ATGTATAATAAAGTTATCATGATCGGGCGCTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTGAATCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATTTGGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTCCTTGCCACAGGATTCCAACTTTTGGAAAGTCGCGCCCA
ACGTGCTATGCGTGAAAATAACGCAGGACAGGATTTGGCAGATTTGGTCTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GBD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.183

100

0.962
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment