Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MO978_RS07070 Genome accession   NZ_CP093959
Coordinates   1415884..1416309 (-) Length   141 a.a.
NCBI ID   WP_289421631.1    Uniprot ID   -
Organism   Lactococcus lactis strain FAM 17919     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1383466..1425430 1415884..1416309 within 0


Gene organization within MGE regions


Location: 1383466..1425430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO978_RS06815 (MO978_06820) - 1383466..1383996 (-) 531 WP_010905913.1 hypothetical protein -
  MO978_RS06825 (MO978_06830) - 1385553..1386842 (-) 1290 WP_082225228.1 LysM peptidoglycan-binding domain-containing protein -
  MO978_RS06830 (MO978_06835) - 1386839..1387105 (-) 267 WP_015966839.1 phage holin -
  MO978_RS06835 (MO978_06840) - 1387102..1387344 (-) 243 WP_082225229.1 hemolysin XhlA family protein -
  MO978_RS06840 (MO978_06845) - 1387357..1387593 (-) 237 WP_082225230.1 hypothetical protein -
  MO978_RS06845 (MO978_06850) - 1387605..1391582 (-) 3978 WP_289421638.1 hypothetical protein -
  MO978_RS06850 (MO978_06855) - 1391582..1392316 (-) 735 WP_289421637.1 phage tail domain-containing protein -
  MO978_RS06855 (MO978_06860) - 1392273..1393115 (-) 843 WP_373961842.1 distal tail protein Dit -
  MO978_RS06860 (MO978_06865) - 1393118..1396039 (-) 2922 WP_373961843.1 tape measure protein -
  MO978_RS06865 (MO978_06870) istB 1396141..1396899 (-) 759 WP_003331414.1 IS21-like element IS712 family helper ATPase IstB -
  MO978_RS06870 (MO978_06875) istA 1396911..1398134 (-) 1224 WP_003331415.1 IS21-like element IS712 family transposase -
  MO978_RS06875 (MO978_06880) - 1398197..1399090 (-) 894 WP_373961844.1 hypothetical protein -
  MO978_RS06880 (MO978_06885) - 1399108..1399248 (-) 141 WP_014573136.1 hypothetical protein -
  MO978_RS06885 (MO978_06890) - 1399296..1399640 (-) 345 WP_010905385.1 phage tail assembly chaperone -
  MO978_RS06890 (MO978_06895) - 1399700..1400305 (-) 606 WP_010905384.1 phage tail protein -
  MO978_RS06895 (MO978_06900) - 1400307..1400702 (-) 396 WP_010905383.1 DUF806 family protein -
  MO978_RS06900 (MO978_06905) - 1400699..1401181 (-) 483 WP_021214764.1 HK97 gp10 family phage protein -
  MO978_RS06905 (MO978_06910) - 1401181..1401516 (-) 336 WP_010905381.1 phage head closure protein -
  MO978_RS06910 (MO978_06915) - 1401503..1401808 (-) 306 WP_010905380.1 head-tail connector protein -
  MO978_RS06915 (MO978_06920) - 1401819..1403132 (-) 1314 WP_058221420.1 phage major capsid protein -
  MO978_RS06920 (MO978_06925) - 1403122..1403709 (-) 588 WP_010905378.1 HK97 family phage prohead protease -
  MO978_RS06925 (MO978_06930) - 1403709..1404851 (-) 1143 WP_373961847.1 phage portal protein -
  MO978_RS06930 - 1404922..1405239 (-) 318 WP_228764164.1 terminase large subunit domain-containing protein -
  MO978_RS06935 (MO978_06940) - 1405353..1405553 (-) 201 WP_058221648.1 hypothetical protein -
  MO978_RS06940 (MO978_06945) - 1405553..1406005 (-) 453 WP_014573149.1 phage terminase small subunit P27 family -
  MO978_RS06945 (MO978_06950) - 1406122..1406625 (-) 504 WP_058221813.1 HNH endonuclease -
  MO978_RS06950 (MO978_06955) - 1406631..1406867 (-) 237 WP_058221812.1 hypothetical protein -
  MO978_RS06955 (MO978_06960) - 1407156..1407578 (-) 423 WP_032398555.1 RinA family protein -
  MO978_RS06960 (MO978_06965) - 1407655..1407963 (-) 309 WP_019292848.1 hypothetical protein -
  MO978_RS06965 (MO978_06970) - 1408302..1408511 (+) 210 WP_010905366.1 hypothetical protein -
  MO978_RS06970 (MO978_06975) - 1408564..1408749 (-) 186 WP_010905365.1 hypothetical protein -
  MO978_RS06975 (MO978_06980) - 1408757..1409248 (-) 492 WP_032398552.1 phage antirepressor KilAC domain-containing protein -
  MO978_RS06980 (MO978_06985) - 1409257..1409487 (-) 231 WP_032398551.1 hypothetical protein -
  MO978_RS06985 (MO978_06990) - 1409484..1409669 (-) 186 WP_058221669.1 DUF1660 family phage protein -
  MO978_RS06990 (MO978_06995) - 1409666..1409908 (-) 243 WP_014570545.1 hypothetical protein -
  MO978_RS06995 (MO978_07000) - 1409955..1410119 (-) 165 WP_010905701.1 hypothetical protein -
  MO978_RS07000 (MO978_07005) - 1410112..1410486 (-) 375 WP_058221807.1 hypothetical protein -
  MO978_RS07005 (MO978_07010) - 1410479..1410742 (-) 264 WP_029344171.1 hypothetical protein -
  MO978_RS07010 (MO978_07015) - 1410735..1411136 (-) 402 WP_153951833.1 hypothetical protein -
  MO978_RS07015 (MO978_07020) - 1411139..1411558 (-) 420 WP_058221808.1 dUTP diphosphatase -
  MO978_RS07020 (MO978_07025) - 1411555..1412166 (-) 612 WP_058221809.1 DUF1642 domain-containing protein -
  MO978_RS07025 (MO978_07030) - 1412159..1412518 (-) 360 WP_082225233.1 hypothetical protein -
  MO978_RS07030 (MO978_07035) - 1412527..1413036 (-) 510 WP_289452771.1 hypothetical protein -
  MO978_RS07035 (MO978_07040) - 1413047..1413616 (-) 570 WP_373961849.1 DUF658 family protein -
  MO978_RS07040 (MO978_07045) - 1413606..1413785 (-) 180 WP_058221659.1 DUF1497 domain-containing protein -
  MO978_RS07045 (MO978_07050) - 1413897..1414136 (-) 240 WP_082225234.1 DUF1031 family protein -
  MO978_RS07050 (MO978_07055) - 1414129..1414323 (-) 195 WP_010905693.1 hypothetical protein -
  MO978_RS07055 (MO978_07060) - 1414326..1414715 (-) 390 WP_081196279.1 RusA family crossover junction endodeoxyribonuclease -
  MO978_RS07060 (MO978_07065) - 1414705..1414977 (-) 273 WP_058221674.1 hypothetical protein -
  MO978_RS07065 (MO978_07070) - 1414961..1415755 (-) 795 WP_289421633.1 helix-turn-helix domain-containing protein -
  MO978_RS07070 (MO978_07075) ssb 1415884..1416309 (-) 426 WP_289421631.1 single-stranded DNA-binding protein Machinery gene
  MO978_RS07075 (MO978_07080) - 1416302..1417060 (-) 759 WP_015967986.1 Rad52/Rad22 family DNA repair protein -
  MO978_RS07080 (MO978_07085) - 1417069..1417464 (-) 396 WP_058221458.1 hypothetical protein -
  MO978_RS07085 (MO978_07090) - 1417563..1417805 (-) 243 WP_058221457.1 hypothetical protein -
  MO978_RS07090 (MO978_07095) - 1417911..1418189 (+) 279 WP_011834777.1 hypothetical protein -
  MO978_RS07095 (MO978_07100) - 1418144..1418377 (-) 234 WP_011834776.1 hypothetical protein -
  MO978_RS07100 (MO978_07105) - 1418520..1418810 (-) 291 WP_023188819.1 phage protein -
  MO978_RS07105 (MO978_07110) - 1418823..1419586 (-) 764 Protein_1378 phage antirepressor KilAC domain-containing protein -
  MO978_RS07110 (MO978_07115) - 1419599..1419838 (-) 240 WP_058218152.1 helix-turn-helix transcriptional regulator -
  MO978_RS07115 (MO978_07120) - 1419990..1420688 (+) 699 WP_058221742.1 hypothetical protein -
  MO978_RS07120 (MO978_07125) - 1420681..1420914 (-) 234 WP_058221741.1 hypothetical protein -
  MO978_RS07125 (MO978_07130) - 1421178..1421696 (+) 519 WP_058221740.1 helix-turn-helix domain-containing protein -
  MO978_RS07130 (MO978_07135) - 1421706..1422293 (+) 588 WP_058221739.1 hypothetical protein -
  MO978_RS07135 (MO978_07140) - 1422358..1423188 (+) 831 WP_228763241.1 hypothetical protein -
  MO978_RS07140 (MO978_07145) - 1423311..1424390 (+) 1080 WP_058221500.1 site-specific integrase -
  MO978_RS07150 (MO978_07155) - 1425095..1425430 (-) 336 WP_003130477.1 putative DNA-binding protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15658.39 Da        Isoelectric Point: 5.1972

>NTDB_id=665936 MO978_RS07070 WP_289421631.1 1415884..1416309(-) (ssb) [Lactococcus lactis strain FAM 17919]
MINNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRIYITEVVASNFQVLEKSNQANGERVGNPAAKPQNNDSFGSDPMEISDDDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=665936 MO978_RS07070 WP_289421631.1 1415884..1416309(-) (ssb) [Lactococcus lactis strain FAM 17919]
ATGATTAACAATGTCACTCTAGTAGGGCGAATTACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATCGGAGTTACTGGTAGTATTCAAACTCGA
AACTACGAGAACCAACAAGGGCAACGTATTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCAGCAAAACCACAAAATAACGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.631
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.972

100

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.972

100

0.44
  ssbB/cilA Streptococcus mitis NCTC 12261

43.972

100

0.44
  ssbB/cilA Streptococcus pneumoniae Rx1

43.262

100

0.433
  ssbB/cilA Streptococcus pneumoniae D39

43.262

100

0.433
  ssbB/cilA Streptococcus pneumoniae R6

43.262

100

0.433
  ssbB/cilA Streptococcus mitis SK321

43.262

100

0.433
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.731

73.759

0.418
  ssbA Streptococcus mutans UA159

39.716

100

0.397
  ssbB Lactococcus lactis subsp. cremoris KW2

50.485

73.05

0.369