Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SCSC_RS08100 Genome accession   NZ_AP014647
Coordinates   1653035..1653430 (-) Length   131 a.a.
NCBI ID   WP_003070740.1    Uniprot ID   A0AAD2SVP3
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1648035..1658430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS08080 (SCSC_1664) - 1648476..1649762 (-) 1287 WP_037565851.1 extracellular solute-binding protein -
  SCSC_RS08085 (SCSC_1665) - 1649759..1650442 (-) 684 WP_003070735.1 response regulator transcription factor -
  SCSC_RS08090 (SCSC_1666) - 1650435..1651748 (-) 1314 WP_003070736.1 sensor histidine kinase -
  SCSC_RS08095 (SCSC_1667) - 1651748..1652734 (-) 987 WP_006269997.1 sugar ABC transporter substrate-binding protein -
  SCSC_RS08100 (SCSC_1668) ssbB/cilA 1653035..1653430 (-) 396 WP_003070740.1 single-stranded DNA-binding protein Machinery gene
  SCSC_RS08105 (SCSC_1669) ytpR 1653502..1654128 (-) 627 WP_003070743.1 YtpR family tRNA-binding protein -
  SCSC_RS08110 (SCSC_1670) - 1654150..1654467 (-) 318 WP_006270004.1 thioredoxin family protein -
  SCSC_RS08115 (SCSC_1671) - 1654464..1654751 (-) 288 WP_006269980.1 DUF4651 domain-containing protein -
  SCSC_RS08120 (SCSC_1672) pepA 1654871..1655935 (+) 1065 WP_022524629.1 glutamyl aminopeptidase -
  SCSC_RS08125 (SCSC_1673) - 1656059..1656697 (+) 639 WP_006270005.1 hypothetical protein -
  SCSC_RS08130 (SCSC_1674) - 1657076..1657636 (-) 561 WP_006269984.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14715.64 Da        Isoelectric Point: 5.9381

>NTDB_id=66584 SCSC_RS08100 WP_003070740.1 1653035..1653430(-) (ssbB/cilA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVIVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=66584 SCSC_RS08100 WP_003070740.1 1653035..1653430(-) (ssbB/cilA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGTTAAATAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACGCTTGCTGTTAATCGCCGATATAAAGGACAAAATGGCGAGCGAGAAGCGGATTTTGTAAACGTCATTGTTT
GGGGCAAATTAGCCGAAACCTTAGCAAGTTATGCAACAAAAGGAAGCTTAATTTCTCTTGATGGAGAACTTCGTACTCGC
CGTTATGAGAAAGACGGTGTGACACATTATGTAACAGAAGTACTTTGCAACGGCTTCCAGTTATTAGAAAGTCGTGCCCA
ACGAGCTCTTCGTGAGAATAATACAGGTGCAGACTTGGCAGATTTGGTTCTAGAAGAAGAGGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment