Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JCM16456_RS00185 Genome accession   NZ_AP014635
Coordinates   40495..41613 (+) Length   372 a.a.
NCBI ID   WP_068711329.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 35495..46613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS00165 trkA 35999..37375 (-) 1377 WP_068711321.1 Trk system potassium transporter TrkA -
  JCM16456_RS00170 rsmB 37434..38714 (-) 1281 WP_068711323.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JCM16456_RS00175 fmt 38766..39713 (-) 948 WP_068711325.1 methionyl-tRNA formyltransferase -
  JCM16456_RS00180 def 39732..40241 (-) 510 WP_068711327.1 peptide deformylase -
  JCM16456_RS00185 dprA 40495..41613 (+) 1119 WP_068711329.1 DNA-processing protein DprA Machinery gene
  JCM16456_RS00190 - 41616..42092 (+) 477 WP_068711331.1 DUF494 family protein -
  JCM16456_RS00195 - 42108..42683 (+) 576 WP_068711333.1 type I DNA topoisomerase -
  JCM16456_RS00200 - 42795..43928 (-) 1134 WP_068711335.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  JCM16456_RS00205 purE 43932..44417 (-) 486 WP_068711337.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JCM16456_RS00210 - 44616..45173 (+) 558 WP_068711339.1 L-threonylcarbamoyladenylate synthase -
  JCM16456_RS00215 hemF 45233..46147 (+) 915 WP_068711341.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40672.40 Da        Isoelectric Point: 6.5008

>NTDB_id=66393 JCM16456_RS00185 WP_068711329.1 40495..41613(+) (dprA) [Vibrio tritonius strain AM2]
MAQDESLRAWMALSFVPRLGMKNLSRLLSHDAPEKLLSYSNTQWQAIGLKGDQVRYLQSQAIQEAERCLEWQQASELRTI
LTPQHSLYPPLLKEIASAPPVLFVEGEVQCLSLPQIAIVGSRNATIDGQRAAHQFARELVEHGVVVTSGLALGIDGYAHD
GALSGQGKTVAVLGSGFNHLYPARHRQLAERIKHSGALVSEFRPDTKPRAEHFPRRNRIVSGLSLGVLVVEAALKSGSLI
TARYATEQDREVFVLPGTIYQSNYAGSNDLIRQGACLVQNVPQIIEELGAMLDWSINQQNLTQPALFSSPNDEEQLPFPL
LLANVGVEATPVDILASRTNIPVQDIMTQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=66393 JCM16456_RS00185 WP_068711329.1 40495..41613(+) (dprA) [Vibrio tritonius strain AM2]
ATGGCGCAGGATGAATCATTACGAGCGTGGATGGCATTAAGTTTTGTTCCGCGCTTGGGGATGAAAAACTTATCGCGACT
ATTAAGCCATGATGCGCCAGAAAAGCTATTGTCCTATTCAAATACTCAGTGGCAGGCGATAGGGCTTAAAGGAGATCAAG
TTCGGTATTTGCAGTCGCAGGCAATTCAAGAAGCTGAACGATGTCTTGAGTGGCAGCAAGCGAGTGAACTCAGAACCATT
TTGACCCCTCAGCACTCGCTATATCCACCTTTATTAAAAGAGATCGCATCAGCGCCTCCGGTGTTATTTGTTGAAGGTGA
GGTTCAATGCCTTTCATTACCTCAAATAGCCATTGTGGGTAGTCGTAATGCAACCATTGACGGACAACGCGCAGCGCATC
AGTTTGCTCGTGAATTAGTTGAGCATGGTGTTGTTGTAACGAGTGGGTTAGCGTTGGGGATTGATGGCTATGCCCATGAT
GGTGCGCTATCAGGTCAAGGCAAGACGGTTGCAGTGCTTGGCTCAGGCTTTAATCATTTATATCCTGCTCGGCATCGTCA
ATTAGCAGAACGAATCAAGCACTCGGGAGCGTTAGTTTCTGAATTTCGTCCAGATACCAAACCAAGAGCTGAGCATTTCC
CACGGCGCAATCGTATTGTGAGTGGTTTGTCGTTAGGCGTGCTGGTGGTTGAAGCTGCATTAAAGAGTGGTTCATTAATT
ACTGCTCGGTATGCCACAGAACAAGATAGAGAAGTATTTGTATTGCCAGGGACGATTTATCAGTCCAATTATGCAGGCAG
TAATGACTTGATTCGCCAAGGGGCATGTTTAGTACAAAACGTGCCTCAAATCATTGAAGAGTTAGGGGCTATGCTGGATT
GGTCGATTAATCAGCAGAACTTGACTCAACCTGCACTTTTTTCTTCTCCAAATGATGAAGAACAATTGCCATTTCCCTTG
CTGTTAGCTAACGTAGGAGTAGAAGCCACACCAGTTGATATTCTCGCAAGTCGGACCAATATACCGGTGCAAGATATCAT
GACACAGCTTTTAGAGCTTGAGCTCTCTGGGCATGTGGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(321-365)

DNA recombination-mediator protein A (DNA_processg_A)

(79-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.054

99.462

0.637
  dprA Vibrio campbellii strain DS40M4

63.144

99.194

0.626
  dprA Glaesserella parasuis strain SC1401

45.43

100

0.454
  dprA Neisseria meningitidis strain C311

36.049

100

0.392
  dprA Neisseria meningitidis MC58

36.049

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

35.627

100

0.39
  dprA Haemophilus influenzae Rd KW20

43.413

89.785

0.39
  dprA Acinetobacter baumannii D1279779

43.505

88.978

0.387
  dprA Neisseria gonorrhoeae MS11

35.381

100

0.387
  dprA Acinetobacter baylyi ADP1

38.441

100

0.384
  dprA Acinetobacter baumannii strain A118

43.202

88.978

0.384
  dprA Legionella pneumophila strain ERS1305867

47

80.645

0.379

Multiple sequence alignment