Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MM522_RS16150 Genome accession   NZ_CP093067
Coordinates   3147099..3147440 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain ATC-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3142099..3152440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS16135 (MM522_16135) hepA 3142342..3145110 (+) 2769 WP_129010254.1 DEAD/DEAH box helicase -
  MM522_RS16140 (MM522_16140) ywpJ 3145236..3146093 (-) 858 WP_129010255.1 phosphatase YwpJ -
  MM522_RS16145 (MM522_16145) glcR 3146099..3146875 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  MM522_RS16150 (MM522_16150) ssbB 3147099..3147440 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  MM522_RS16155 (MM522_16155) ywpG 3147517..3147900 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  MM522_RS16160 (MM522_16160) ywpF 3148075..3148485 (+) 411 WP_014481144.1 YwpF-like family protein -
  MM522_RS16165 (MM522_16165) - 3148625..3149017 (-) 393 Protein_3169 class A sortase -
  MM522_RS16170 (MM522_16170) - 3149004..3149162 (-) 159 WP_175407070.1 hypothetical protein -
  MM522_RS16175 (MM522_16175) ywpD 3149265..3150101 (+) 837 WP_241495724.1 histidine kinase -
  MM522_RS16180 (MM522_16180) mscL 3150132..3150527 (-) 396 WP_101172332.1 large conductance mechanosensitive channel protein MscL -
  MM522_RS16185 (MM522_16185) fabZ 3150600..3151025 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MM522_RS16190 (MM522_16190) rapD 3151217..3152281 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=661871 MM522_RS16150 WP_003227798.1 3147099..3147440(-) (ssbB) [Bacillus subtilis strain ATC-3]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=661871 MM522_RS16150 WP_003227798.1 3147099..3147440(-) (ssbB) [Bacillus subtilis strain ATC-3]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389