Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   ML603_RS00720 Genome accession   NZ_CP092887
Coordinates   117186..117512 (+) Length   108 a.a.
NCBI ID   WP_192942720.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112186..122512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS00705 (ML603_00705) - 114830..115195 (+) 366 WP_003055257.1 DUF1033 family protein -
  ML603_RS00710 (ML603_00710) comYA 115276..116217 (+) 942 WP_241067295.1 competence type IV pilus ATPase ComGA Machinery gene
  ML603_RS00715 (ML603_00715) comYB 116153..117184 (+) 1032 WP_241067698.1 competence type IV pilus assembly protein ComGB Machinery gene
  ML603_RS00720 (ML603_00720) comYC 117186..117512 (+) 327 WP_192942720.1 competence type IV pilus major pilin ComGC Machinery gene
  ML603_RS00725 (ML603_00725) comGD 117487..117915 (+) 429 WP_256867278.1 competence type IV pilus minor pilin ComGD -
  ML603_RS00730 (ML603_00730) comGE 117872..118168 (+) 297 WP_003061797.1 competence type IV pilus minor pilin ComGE -
  ML603_RS00735 (ML603_00735) comGF 118149..118589 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF -
  ML603_RS00740 (ML603_00740) comGG 118618..118941 (+) 324 WP_226955945.1 competence type IV pilus minor pilin ComGG -
  ML603_RS00745 (ML603_00745) comYH 119004..119957 (+) 954 WP_192942722.1 class I SAM-dependent methyltransferase Machinery gene
  ML603_RS00750 (ML603_00750) - 120016..121212 (+) 1197 WP_084916957.1 acetate kinase -
  ML603_RS00755 (ML603_00755) - 121518..121724 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  ML603_RS00760 (ML603_00760) - 121827..122507 (+) 681 WP_249631374.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12467.47 Da        Isoelectric Point: 9.6408

>NTDB_id=660903 ML603_RS00720 WP_192942720.1 117186..117512(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLRQLKD
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=660903 ML603_RS00720 WP_192942720.1 117186..117512(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTGCTGGTGATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTGCCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTACGACAGTTGAAGGAC
GATGGCAGTATTACAGATAAACAGGTAAAAGCTTATACAGACTATTATGGAAAACACAGAGATGAGACTCAAAAACTGCA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

58.095

97.222

0.565
  comGC/cglC Streptococcus pneumoniae Rx1

52.83

98.148

0.519
  comGC/cglC Streptococcus pneumoniae D39

52.83

98.148

0.519
  comGC/cglC Streptococcus pneumoniae R6

52.83

98.148

0.519
  comGC/cglC Streptococcus mitis SK321

52.83

98.148

0.519
  comGC/cglC Streptococcus pneumoniae TIGR4

52.336

99.074

0.519
  comGC Lactococcus lactis subsp. cremoris KW2

53.398

95.37

0.509
  comGC/cglC Streptococcus mitis NCTC 12261

54.545

91.667

0.5
  comYC Streptococcus mutans UA140

52.475

93.519

0.491
  comYC Streptococcus mutans UA159

52.475

93.519

0.491
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417