Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG709_RS10355 Genome accession   NZ_CP108455
Coordinates   2239192..2241114 (+) Length   640 a.a.
NCBI ID   WP_250298195.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01267     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2234192..2246114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG709_RS10340 (OG709_10345) - 2235575..2235874 (+) 300 WP_250298192.1 YtxH domain-containing protein -
  OG709_RS10345 (OG709_10350) - 2235905..2237350 (+) 1446 WP_329165730.1 FGGY family carbohydrate kinase -
  OG709_RS10350 (OG709_10355) rcrP 2237459..2239192 (+) 1734 WP_250298194.1 ABC transporter ATP-binding protein Regulator
  OG709_RS10355 (OG709_10360) rcrQ 2239192..2241114 (+) 1923 WP_250298195.1 ABC transporter ATP-binding protein Regulator
  OG709_RS10360 (OG709_10365) - 2241290..2242513 (-) 1224 WP_250298197.1 sigma-70 family RNA polymerase sigma factor -
  OG709_RS10365 (OG709_10370) dnaG 2242705..2244606 (-) 1902 WP_326694941.1 DNA primase -
  OG709_RS10370 (OG709_10375) - 2244705..2245982 (-) 1278 WP_329165735.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69260.95 Da        Isoelectric Point: 5.7851

>NTDB_id=660902 OG709_RS10355 WP_250298195.1 2239192..2241114(+) (rcrQ) [Streptomyces sp. NBC_01267]
MAGPGGRMMMGPTQKSMDFKGSGKRLLRMLAQDRPALFAMLTAVVGSVALSVIGPKILGRATDLIFGGIIGRQLPASTTK
AQALQGLRAKGQGAMADMLSGVDFTPGQGIDFTEVGKILLLALAAFVCAGLLMLTTTRLAARIINQAVYRMREEIQAKLS
RLPLSYYDKAKRGEVLSRTTNDVDNIGQTMQQTMGQLVNSLLTIIGVLVMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKVFGRQEESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVI
GGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQEPDAETAERPENLRGSISLEKV
AFRYSPDKPLIDDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIVLDGVDIARMSREDLRSGIGMVLQDTWL
FGGSIADNIAYGSSRPVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGSHEELLAADGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=660902 OG709_RS10355 WP_250298195.1 2239192..2241114(+) (rcrQ) [Streptomyces sp. NBC_01267]
ATGGCCGGTCCTGGTGGACGCATGATGATGGGGCCGACCCAGAAGTCCATGGACTTCAAGGGGTCGGGCAAACGGCTGCT
GCGGATGCTCGCGCAGGACCGCCCCGCGCTCTTCGCGATGCTGACGGCCGTGGTCGGCAGCGTCGCTCTCTCGGTGATCG
GGCCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGGTGGGATCATCGGCCGGCAGCTGCCGGCGAGCACGACCAAG
GCGCAGGCCCTTCAGGGGCTGCGCGCCAAGGGCCAAGGCGCCATGGCCGACATGCTCTCCGGTGTCGACTTCACTCCGGG
CCAGGGCATCGACTTCACCGAGGTCGGCAAGATCCTGCTGCTCGCGCTGGCGGCGTTCGTCTGCGCGGGCCTGCTGATGC
TGACCACCACCCGGCTCGCGGCGCGGATCATCAACCAGGCCGTGTACCGGATGCGTGAGGAGATCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTACGACAAGGCGAAGCGCGGCGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACCATGCAGCAGACGATGGGACAGCTGGTCAACTCGCTGCTGACCATCATCGGTGTGCTGGTGATGATGTTCTGGA
TCTCCTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTCCTGGTGGCGACGCGGGTCGGCAAGCGGTCG
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACGCCCT
GGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGGAGGCGTTCCGCGAGCAGAACGACGCGCTGTACGAGGCGGGCTTCA
AGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTACGTGCTGGTGGCGGTCATC
GGCGGCCTCCGGGTCGCTTCGGGCTCGCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAACTGCTCG
ACGCGGAGGAGCAGGAGCCCGACGCGGAGACCGCCGAGCGGCCCGAGAACCTGCGCGGCAGCATCTCGCTGGAGAAGGTC
GCCTTCCGGTACTCACCGGACAAGCCGCTCATCGACGATCTGTCGCTGTCGGTGGAGCCGGGGCACACGGTCGCGATCGT
CGGTCCGACCGGCGCGGGCAAGACGACCCTGGTGAATCTGCTGATGCGGTTCTACGAAGTGACCGGCGGGCGGATCGTGC
TCGACGGTGTCGACATCGCCAGGATGTCCCGTGAGGACCTGCGTTCCGGCATAGGGATGGTGCTCCAGGACACCTGGCTC
TTCGGCGGCTCGATCGCGGACAACATCGCGTACGGCTCCTCGCGTCCGGTCACCCGCGAGCAGATCGAGGAAGCGGCCCG
CGCGGCCCACGCCGACCGCTTCATCCGCACCCTCCCCGAGGGCTACGACACGGTGATCGACGACGAGGGCACCGGGGTGA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCCGAGCCGGTGATCCTGGTGCTGGACGAGGCGACG
AGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGCACGGTCGTACGAGCTTCGTCAT
CGCACACCGGCTGTCCACGATCCGGGACGCGGATGTGATTCTGGTGATGGAGAGCGGGGCGATCGTCGAGCAGGGGTCGC
ACGAGGAGCTGCTGGCGGCGGACGGGGCGTACGCGCGGTTGTACGCGGCGCAGTTCGCGCAGGCAGTGGTCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.939

96.563

0.395