Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   MKZ30_RS08375 Genome accession   NZ_CP092784
Coordinates   1753604..1753879 (-) Length   91 a.a.
NCBI ID   WP_002366896.1    Uniprot ID   -
Organism   Enterococcus sp. LX10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748604..1758879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ30_RS08340 - 1749166..1749639 (+) 474 WP_002357065.1 universal stress protein -
  MKZ30_RS08345 - 1749744..1750931 (-) 1188 WP_002357064.1 acetate kinase -
  MKZ30_RS08350 - 1750956..1751963 (-) 1008 WP_033600640.1 class I SAM-dependent methyltransferase -
  MKZ30_RS08355 comGG 1752092..1752445 (-) 354 WP_002362054.1 competence type IV pilus minor pilin ComGG -
  MKZ30_RS08360 comGF 1752445..1752879 (-) 435 WP_002357060.1 competence type IV pilus minor pilin ComGF -
  MKZ30_RS08365 - 1752869..1753195 (-) 327 WP_002419696.1 type II secretion system protein -
  MKZ30_RS08370 comGD 1753161..1753607 (-) 447 WP_002419697.1 competence type IV pilus minor pilin ComGD -
  MKZ30_RS08375 comGC/cglC 1753604..1753879 (-) 276 WP_002366896.1 competence type IV pilus major pilin ComGC Machinery gene
  MKZ30_RS08380 comGB 1753879..1754925 (-) 1047 WP_249958752.1 competence type IV pilus assembly protein ComGB -
  MKZ30_RS08385 comGA 1754882..1755850 (-) 969 WP_002374519.1 competence type IV pilus ATPase ComGA -
  MKZ30_RS08390 - 1756093..1757421 (-) 1329 WP_010816624.1 amino acid permease -
  MKZ30_RS08395 rlmN 1757712..1758785 (-) 1074 WP_002356987.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10492.43 Da        Isoelectric Point: 9.3340

>NTDB_id=660311 MKZ30_RS08375 WP_002366896.1 1753604..1753879(-) (comGC/cglC) [Enterococcus sp. LX10]
MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYTLEKNRTPSLNELVNEGYITK
EQLDKYTAEKQ

Nucleotide


Download         Length: 276 bp        

>NTDB_id=660311 MKZ30_RS08375 WP_002366896.1 1753604..1753879(-) (comGC/cglC) [Enterococcus sp. LX10]
ATGAAAAAGAAACAAAAATACGCAGGGTTTACATTATTAGAAATGTTGATTGTCTTATTGATTATTTCCGTATTGATTTT
ACTTTTTGTCCCTAACTTAGCGAAACATAAAGAAACAGTTGATAAAAAAGGCAATGAAGCAATCGTAAAAATTGTGGAAT
CACAAATCGAGCTCTATACACTAGAAAAAAATAGGACGCCTTCCTTAAATGAATTAGTCAACGAAGGCTACATTACTAAA
GAACAGTTAGATAAATATACAGCAGAAAAGCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus pneumoniae Rx1

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae D39

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae R6

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae TIGR4

63.095

92.308

0.582
  comGC/cglC Streptococcus mitis NCTC 12261

61.905

92.308

0.571
  comGC/cglC Streptococcus mitis SK321

61.176

93.407

0.571
  comGC Lactococcus lactis subsp. cremoris KW2

58.14

94.505

0.549
  comYC Streptococcus gordonii str. Challis substr. CH1

56.322

95.604

0.538
  comYC Streptococcus suis isolate S10

52.326

94.505

0.495
  comYC Streptococcus mutans UA159

57.692

85.714

0.495
  comYC Streptococcus mutans UA140

57.692

85.714

0.495
  comGC Latilactobacillus sakei subsp. sakei 23K

46.154

100

0.462
  comGC Staphylococcus aureus MW2

48.101

86.813

0.418
  comGC Staphylococcus aureus N315

48.101

86.813

0.418
  comGC Bacillus subtilis subsp. subtilis str. 168

48.649

81.319

0.396