Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MKS87_RS19470 Genome accession   NZ_CP092631
Coordinates   3746972..3747313 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain YB-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3741972..3752313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS19455 (MKS87_19455) hepA 3742216..3744984 (+) 2769 WP_197196272.1 DEAD/DEAH box helicase -
  MKS87_RS19460 (MKS87_19460) ywpJ 3745109..3745966 (-) 858 WP_003227801.1 phosphatase YwpJ -
  MKS87_RS19465 (MKS87_19465) glcR 3745972..3746748 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  MKS87_RS19470 (MKS87_19470) ssbB 3746972..3747313 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  MKS87_RS19475 (MKS87_19475) ywpG 3747390..3747773 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  MKS87_RS19480 (MKS87_19480) ywpF 3747948..3748358 (+) 411 WP_003227794.1 YwpF-like family protein -
  MKS87_RS19485 (MKS87_19485) - 3748498..3749136 (-) 639 WP_197196273.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=659389 MKS87_RS19470 WP_003227798.1 3746972..3747313(-) (ssbB) [Bacillus subtilis strain YB-15]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=659389 MKS87_RS19470 WP_003227798.1 3746972..3747313(-) (ssbB) [Bacillus subtilis strain YB-15]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389