Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MID13_RS15405 Genome accession   NZ_CP092384
Coordinates   3404708..3405820 (-) Length   370 a.a.
NCBI ID   WP_239716924.1    Uniprot ID   -
Organism   Vibrio gigantis strain ACE001     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3399708..3410820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS15375 (MID13_15375) hemF 3400225..3401142 (-) 918 WP_215408293.1 oxygen-dependent coproporphyrinogen oxidase -
  MID13_RS15380 (MID13_15380) - 3401163..3401720 (-) 558 WP_061033976.1 L-threonylcarbamoyladenylate synthase -
  MID13_RS15385 (MID13_15385) purE 3401916..3402401 (+) 486 WP_004739348.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  MID13_RS15390 (MID13_15390) - 3402407..3403537 (+) 1131 WP_239716920.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  MID13_RS15395 (MID13_15395) - 3403643..3404215 (-) 573 WP_239716922.1 type I DNA topoisomerase -
  MID13_RS15400 (MID13_15400) - 3404228..3404704 (-) 477 WP_048657837.1 DUF494 family protein -
  MID13_RS15405 (MID13_15405) dprA 3404708..3405820 (-) 1113 WP_239716924.1 DNA-processing protein DprA Machinery gene
  MID13_RS15410 (MID13_15410) - 3405817..3406908 (-) 1092 WP_060983485.1 LysM peptidoglycan-binding domain-containing protein -
  MID13_RS15415 (MID13_15415) def 3407049..3407561 (+) 513 WP_017058772.1 peptide deformylase -
  MID13_RS15420 (MID13_15420) fmt 3407600..3408547 (+) 948 WP_239716926.1 methionyl-tRNA formyltransferase -
  MID13_RS15425 (MID13_15425) rsmB 3408640..3409920 (+) 1281 WP_017631532.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39880.53 Da        Isoelectric Point: 7.5365

>NTDB_id=657108 MID13_RS15405 WP_239716924.1 3404708..3405820(-) (dprA) [Vibrio gigantis strain ACE001]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSTDSPSNIVGNSSQQLQAMGLSAKQISYLREQAPREVEACLAWQARQPNHHII
TPNCPHYPKLLNETASAPSVLFVKGHVGKLIEPQIAMVGSRNASIEGLQTAKAFAKEFVQNGLIVTSGLALGIDGYAHDG
ALAKGGETFAVLGSGLDSIYPARHRSLADRICDNGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSSTSRGGNSLIKAGACLVQNAQDVLIEIKSLLNWSIDQQPSLFEPTQNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=657108 MID13_RS15405 WP_239716924.1 3404708..3405820(-) (dprA) [Vibrio gigantis strain ACE001]
GTGAATGAGCAACAACTGAGTGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAACGCCTTTCTCGCCTGCT
GAGTACCGATTCCCCTTCGAACATTGTTGGCAACTCAAGTCAGCAGCTACAAGCGATGGGTTTGTCAGCCAAGCAAATTT
CTTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGCGTGGCAAGCAAGGCAGCCCAACCATCACATCATT
ACCCCTAACTGCCCACACTACCCCAAACTGCTGAACGAGACAGCCTCTGCGCCCAGTGTTCTTTTCGTTAAGGGGCATGT
TGGAAAACTGATTGAGCCTCAAATCGCTATGGTTGGCAGTCGTAATGCCAGTATCGAAGGACTACAAACCGCGAAGGCCT
TCGCCAAAGAGTTTGTCCAAAACGGCTTGATAGTCACCAGTGGATTAGCGTTGGGCATCGATGGTTACGCTCATGATGGT
GCTCTGGCTAAAGGAGGGGAAACTTTTGCGGTATTAGGTTCTGGCTTGGATTCCATTTACCCAGCAAGGCATCGAAGTCT
AGCGGATAGAATTTGTGATAATGGTGCGTTGATTTCAGAGTTTCGACCTAGTGCTAAACCAAGACCTGAACATTTCCCCC
GTCGTAACCGTATTATAAGTGGCTTGTCGTTAGGAACCTTGGTGGTGGAAGCGGCTGAGAAGAGTGGCTCTTTGATTACT
GCTCGATATGCCATGGAGCAAGGTCGCGAAGTTTTTGCTCTGCCCGGTTCAATTCATAGCTCAACCAGTCGCGGAGGCAA
CAGTCTCATTAAAGCTGGAGCATGTTTAGTGCAAAATGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAAACTGGT
CTATAGATCAGCAGCCGAGCTTATTCGAACCTACGCAGAATGAGGGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.209

99.73

0.67
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.468
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Legionella pneumophila strain ERS1305867

45.427

88.649

0.403
  dprA Neisseria meningitidis strain C311

37.28

100

0.4
  dprA Neisseria meningitidis MC58

37.28

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.203

100

0.386
  dprA Neisseria gonorrhoeae strain FA1090

36.203

100

0.386
  dprA Acinetobacter baumannii D1279779

42.073

88.649

0.373
  dprA Acinetobacter baylyi ADP1

40.896

90.541

0.37
  dprA Acinetobacter baumannii strain A118

41.896

88.378

0.37