Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LVJ86_RS08445 Genome accession   NZ_CP091510
Coordinates   1834659..1835792 (+) Length   377 a.a.
NCBI ID   WP_047761255.1    Uniprot ID   A0A0J0YRB1
Organism   Neisseria arctica strain KH1503     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829659..1840792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS08430 (LVJ86_08430) - 1830273..1832735 (-) 2463 WP_047761258.1 heavy metal translocating P-type ATPase -
  LVJ86_RS08435 (LVJ86_08435) aroD 1832891..1833652 (-) 762 WP_047761257.1 type I 3-dehydroquinate dehydratase -
  LVJ86_RS08440 (LVJ86_08440) mtnN 1833687..1834391 (-) 705 WP_152667055.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  LVJ86_RS08445 (LVJ86_08445) pilU 1834659..1835792 (+) 1134 WP_047761255.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LVJ86_RS08450 (LVJ86_08450) - 1835823..1836140 (+) 318 WP_047761283.1 hypothetical protein -
  LVJ86_RS08455 (LVJ86_08455) ccoS 1836140..1836334 (+) 195 WP_047761254.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  LVJ86_RS08460 (LVJ86_08460) - 1836318..1837649 (+) 1332 WP_047761253.1 MFS transporter -
  LVJ86_RS08465 (LVJ86_08465) - 1837777..1838916 (+) 1140 WP_047761252.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LVJ86_RS08470 (LVJ86_08470) - 1839018..1839500 (+) 483 WP_047761251.1 GNAT family N-acetyltransferase -
  LVJ86_RS08475 (LVJ86_08475) adk 1839600..1840247 (-) 648 WP_047761250.1 adenylate kinase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 42153.14 Da        Isoelectric Point: 6.5770

>NTDB_id=651871 LVJ86_RS08445 WP_047761255.1 1834659..1835792(+) (pilU) [Neisseria arctica strain KH1503]
MTDNTSSLPAKEALYTWLRHLNRHKGSDLFITTNFPPAIKLDGKITPIEETPLSAERCMEVAFSVMNTKQIEEFTNTNEC
NFAISLPDTSRFRVNAMVQRGATALVFRAITSAIPKFESLNLPPVLKQIALTKRGLVIFVGGTGSGKSTSLASMIDYRNE
NSHDHIITIEDPIEFVHTHKKSIITQREVGVDTENWQAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLH
ANSTNQALDRIINFFPEERRTQLLTDLSLNLRAFVSQRLVPRESGKGRVAAVEVLLNSPLIADLILKGEVHGIKDLMKKS
TDHGMQTFDQALYELYESGQISFQEALKNADSAHDLRLDIQLRSRRAQTAGPDLELI

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=651871 LVJ86_RS08445 WP_047761255.1 1834659..1835792(+) (pilU) [Neisseria arctica strain KH1503]
ATGACGGATAACACTTCTTCACTACCCGCTAAAGAAGCACTTTACACTTGGCTTCGCCATCTCAACCGCCACAAAGGCTC
CGACCTTTTCATCACAACCAACTTCCCGCCCGCAATAAAGCTGGACGGTAAAATCACACCGATTGAAGAGACTCCCCTTT
CTGCCGAGCGCTGCATGGAAGTAGCCTTTTCAGTGATGAATACCAAACAAATAGAAGAATTTACCAACACCAATGAGTGC
AACTTCGCCATCAGCCTGCCCGACACCAGCCGTTTCCGTGTCAACGCCATGGTTCAGCGCGGCGCAACGGCTTTGGTGTT
TCGCGCCATTACCAGCGCCATTCCAAAATTCGAAAGTCTCAACCTTCCGCCGGTATTGAAACAAATCGCCCTAACCAAAC
GCGGTTTGGTTATTTTTGTGGGCGGCACGGGTTCGGGTAAATCCACCTCACTGGCGTCGATGATTGACTACCGCAACGAA
AACAGCCACGACCATATTATTACCATTGAAGATCCTATTGAATTCGTACACACCCATAAAAAGAGCATCATCACCCAACG
CGAAGTAGGCGTTGATACCGAAAACTGGCAAGCGGCATTAAAAAACACCCTCCGCCAAGCACCCGATGTGATTCTGATCG
GTGAGATACGCGACCGGGAAACCATGGACTACGCGATCGCTTTTGCCGAAACCGGCCACCTCTGTATGGCTACCTTACAC
GCCAACAGCACCAACCAAGCGCTCGACCGAATCATCAACTTCTTCCCCGAAGAACGCCGCACCCAGCTGCTGACCGACTT
ATCGCTCAACCTGCGTGCTTTCGTTTCACAGCGTCTGGTACCGCGCGAATCAGGCAAAGGCCGCGTTGCAGCAGTAGAGG
TGCTGCTTAACTCGCCATTGATCGCCGACTTGATTTTAAAAGGCGAAGTCCACGGTATTAAAGACTTGATGAAAAAATCA
ACCGACCACGGCATGCAAACTTTCGACCAAGCTTTATATGAGTTGTACGAAAGCGGCCAGATCAGCTTCCAAGAGGCCCT
GAAAAATGCCGACTCTGCCCACGACTTACGCCTCGACATCCAATTACGCAGCCGCCGTGCGCAAACCGCCGGTCCGGATT
TGGAATTGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(56-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YRB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

63.401

92.042

0.584
  pilU Acinetobacter baylyi ADP1

56.851

90.981

0.517
  pilU Vibrio cholerae strain A1552

53.631

94.96

0.509
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.444

88.329

0.393
  pilT Legionella pneumophila strain ERS1305867

43.125

84.881

0.366
  pilT Legionella pneumophila strain Lp02

43.125

84.881

0.366
  pilT Neisseria meningitidis 8013

40.896

88.859

0.363
  pilT Acinetobacter nosocomialis M2

42.284

85.942

0.363
  pilT Acinetobacter baumannii D1279779

42.284

85.942

0.363
  pilT Acinetobacter baumannii strain A118

42.284

85.942

0.363
  pilT Acinetobacter baylyi ADP1

41.515

87.533

0.363