Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   L3475_RS09870 Genome accession   NZ_CP091451
Coordinates   1897275..1898216 (-) Length   313 a.a.
NCBI ID   WP_000249567.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3238/09     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892275..1903216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3475_RS09830 (L3475_09750) comYH 1892768..1893721 (-) 954 WP_000345119.1 class I SAM-dependent methyltransferase Machinery gene
  L3475_RS09835 (L3475_09755) - 1893782..1894369 (-) 588 WP_000679774.1 class I SAM-dependent methyltransferase -
  L3475_RS09840 (L3475_09760) comGG/cglG 1894506..1894919 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  L3475_RS09845 (L3475_09765) comGF/cglF 1894897..1895358 (-) 462 WP_000250545.1 competence type IV pilus minor pilin ComGF Machinery gene
  L3475_RS09850 (L3475_09770) comGE/cglE 1895321..1895623 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  L3475_RS09855 (L3475_09775) comGD/cglD 1895586..1895990 (-) 405 WP_000588005.1 competence type IV pilus minor pilin ComGD Machinery gene
  L3475_RS09860 (L3475_09780) comGC/cglC 1895983..1896309 (-) 327 WP_263275209.1 comG operon protein ComGC Machinery gene
  L3475_RS09865 (L3475_09785) comGB/cglB 1896311..1897327 (-) 1017 WP_013193332.1 competence type IV pilus assembly protein ComGB Machinery gene
  L3475_RS09870 (L3475_09790) comGA/cglA/cilD 1897275..1898216 (-) 942 WP_000249567.1 competence type IV pilus ATPase ComGA Machinery gene
  L3475_RS09875 (L3475_09795) - 1898292..1898657 (-) 366 WP_000286415.1 DUF1033 family protein -
  L3475_RS09880 (L3475_09800) - 1898808..1899866 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  L3475_RS09885 (L3475_09805) nagA 1900029..1901180 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  L3475_RS09890 (L3475_09810) - 1901333..1903150 (-) 1818 WP_001220865.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35573.48 Da        Isoelectric Point: 6.0083

>NTDB_id=651361 L3475_RS09870 WP_000249567.1 1897275..1898216(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain 3238/09]
MVQEIAQEIIRSARKKGTQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDQKIASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFANRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=651361 L3475_RS09870 WP_000249567.1 1897275..1898216(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain 3238/09]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCAGCTCGGAAAAAAGGGACGCAGGATATCTATTTTGTCCCTAAGTT
AGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCAGAAGATAGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGGCATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACCTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGGCTCT
ATCTTTTTGCTGGTCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGCCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACAGCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCATGCTAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTTTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAACAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

99.361

100

0.994
  comGA/cglA/cilD Streptococcus pneumoniae D39

99.361

100

0.994
  comGA/cglA/cilD Streptococcus pneumoniae R6

99.361

100

0.994
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

99.361

100

0.994
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

96.486

100

0.965
  comYA Streptococcus gordonii str. Challis substr. CH1

77.742

99.042

0.77
  comYA Streptococcus mutans UA159

65.916

99.361

0.655
  comYA Streptococcus mutans UA140

65.916

99.361

0.655
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.581

99.042

0.62
  comGA Lactococcus lactis subsp. cremoris KW2

54.808

99.681

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

42.642

84.665

0.361