Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHB16_RS20110 Genome accession   NZ_CP108008
Coordinates   4329987..4331396 (-) Length   469 a.a.
NCBI ID   WP_271319622.1    Uniprot ID   A0ABV9WSU0
Organism   Streptomyces sp. NBC_00334     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4324987..4336396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS20090 (OHB16_20105) - 4326243..4326914 (+) 672 WP_271319618.1 response regulator transcription factor -
  OHB16_RS20095 (OHB16_20110) - 4327014..4327676 (-) 663 WP_271319619.1 phosphatase PAP2 family protein -
  OHB16_RS20100 (OHB16_20115) - 4327851..4328705 (+) 855 WP_271319620.1 hypothetical protein -
  OHB16_RS20105 (OHB16_20120) disA 4328781..4329905 (-) 1125 WP_271319621.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHB16_RS20110 (OHB16_20125) radA/sms 4329987..4331396 (-) 1410 WP_271319622.1 DNA repair protein RadA Machinery gene
  OHB16_RS20115 (OHB16_20130) - 4331608..4333364 (+) 1757 Protein_3956 hypothetical protein -
  OHB16_RS20120 (OHB16_20135) - 4333395..4334207 (-) 813 WP_271319623.1 hypothetical protein -
  OHB16_RS20125 (OHB16_20140) - 4334279..4335211 (+) 933 WP_271319624.1 Ppx/GppA phosphatase family protein -
  OHB16_RS20130 (OHB16_20145) - 4335341..4336198 (+) 858 WP_271319625.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49852.94 Da        Isoelectric Point: 7.7531

>NTDB_id=651357 OHB16_RS20110 WP_271319622.1 4329987..4331396(-) (radA/sms) [Streptomyces sp. NBC_00334]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSAVPIGQVDVRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGRVPDGMKVLEVADMGDALRVLPRSRRREATREAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=651357 OHB16_RS20110 WP_271319622.1 4329987..4331396(-) (radA/sms) [Streptomyces sp. NBC_00334]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGCACGGTCGAGGAGTACGGCACGCCCGCCGTGCGTACGACCACTCCGGGGC
GTGTGACCACGTCCGCCGTGCCGATCGGGCAGGTCGACGTGCGGCAGGCGACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTGCCCGGTGCCGTGGTGCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGGACGTTGTACGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCACCTGTACCTGGCCGCCGAGACCGATCTCGCGGCGGTGCTC
GGGCACCTGGACGCGGTGAAGCCGTCGCTGCTGATCCTCGACTCCGTGCAGACGGTGGCCTCGCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGCTGC
TGGTGGGCCACGTCACCAAGGACGGGGCCATCGCCGGGCCGCGGCTCCTCGAGCACCTCGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGAGGCTGGTGCGGGGCGTCAAGAACCGGTACGGCACCACCGACGAGGTCGGCTGCTT
CGAGTTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCAGCGGGCTGTTCCTCACCCGGCGTGCCGAGCCCGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACGACCTCCGGCCTGGAGACGTCGCGGGTGTCGATGATGCTGGCGGTGCTGGAGCAGCGCGGGCG
GATCAGCGCCCTGGGCAAGAGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTGGCGCTGGCCAGTGCGGCGAGTGACACTCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGCCTC
GCCGGCGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTCTCCGAAGCACACCGGCTGGGCTTCACACACGCCCTGGT
ACCGGCCGATCCCGGCAGGGTCCCCGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTCC
CCCGCTCGCGTCGTCGAGAGGCCACCCGGGAGGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis SK321

44.366

90.832

0.403
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403