Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG892_RS30510 Genome accession   NZ_CP108002
Coordinates   6772464..6773141 (+) Length   225 a.a.
NCBI ID   WP_073737699.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00341     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6767464..6778141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG892_RS30490 (OG892_30510) - 6767811..6768044 (-) 234 WP_024489001.1 hypothetical protein -
  OG892_RS30495 (OG892_30515) - 6768484..6770604 (+) 2121 WP_073737702.1 type IIA DNA topoisomerase subunit B -
  OG892_RS30500 (OG892_30520) - 6770789..6771307 (+) 519 WP_328865200.1 DUF1453 domain-containing protein -
  OG892_RS30505 (OG892_30525) - 6771304..6772467 (+) 1164 WP_328865199.1 histidine kinase -
  OG892_RS30510 (OG892_30530) vraR 6772464..6773141 (+) 678 WP_073737699.1 response regulator transcription factor Regulator
  OG892_RS30515 (OG892_30535) - 6773273..6773716 (+) 444 WP_328868343.1 DUF485 domain-containing protein -
  OG892_RS30520 (OG892_30540) - 6773713..6775305 (+) 1593 WP_073737697.1 cation acetate symporter -
  OG892_RS30525 (OG892_30545) - 6775712..6776731 (+) 1020 WP_073737696.1 LacI family DNA-binding transcriptional regulator -
  OG892_RS30530 (OG892_30550) - 6776761..6778131 (-) 1371 WP_328865198.1 citrate synthase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 23834.34 Da        Isoelectric Point: 4.9688

>NTDB_id=651198 OG892_RS30510 WP_073737699.1 6772464..6773141(+) (vraR) [Streptomyces sp. NBC_00341]
MTARVVVADDQSVVREGIVMLLGLLPGIEVVGSAKDGEEAVALVAERAPDVVLMDLRMPRCDGVEATRRIRKNHPATQVV
VLTTFAEDDSLFPALRAGARGYLTKDAGGDEIVRAIEAVLSGEVGLSPAVQRRLLEEVTTGPLPPAAGAEPELPDGMTPR
EAEVLVLIADGLSNAEIARSLHISQATVKSHINNLFAKAGLRDRAQAVRYAYVRGLAQPPGTSFT

Nucleotide


Download         Length: 678 bp        

>NTDB_id=651198 OG892_RS30510 WP_073737699.1 6772464..6773141(+) (vraR) [Streptomyces sp. NBC_00341]
GTGACCGCGCGGGTGGTGGTGGCGGACGACCAGTCGGTGGTGCGCGAGGGAATCGTCATGCTGCTGGGCCTGCTGCCCGG
GATCGAGGTGGTCGGATCGGCGAAGGACGGGGAAGAGGCCGTCGCCCTGGTGGCCGAGCGCGCCCCGGACGTGGTCCTGA
TGGACCTGCGCATGCCCCGCTGCGACGGTGTGGAGGCGACGCGCCGGATCCGCAAGAACCATCCCGCCACCCAGGTCGTC
GTGCTCACGACCTTCGCCGAGGACGATTCACTCTTCCCGGCACTCCGGGCGGGGGCCCGCGGCTACCTCACCAAGGACGC
GGGGGGAGACGAGATCGTGCGGGCCATCGAGGCGGTGCTCTCGGGCGAGGTCGGGCTCTCGCCCGCCGTGCAGCGCCGGC
TGCTGGAGGAGGTCACCACGGGGCCGTTGCCGCCGGCCGCGGGTGCTGAGCCGGAGCTGCCCGACGGGATGACCCCGCGC
GAGGCGGAGGTGCTCGTCCTGATCGCCGACGGGCTGTCCAACGCGGAGATCGCCCGCAGCCTGCACATCTCGCAGGCCAC
CGTGAAGAGCCACATCAACAACCTGTTCGCCAAGGCGGGGCTCCGTGACCGCGCCCAGGCGGTCCGCTATGCGTACGTTC
GGGGGCTCGCACAGCCGCCCGGCACATCCTTCACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.908

96.889

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

37.838

98.667

0.373