Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA88_RS37210 Genome accession   NZ_CP107985
Coordinates   8248762..8249412 (-) Length   216 a.a.
NCBI ID   WP_267006357.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8243762..8254412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS37190 (OHA88_37240) - 8244519..8245349 (-) 831 WP_328628733.1 alpha/beta fold hydrolase -
  OHA88_RS37195 (OHA88_37245) - 8245540..8246424 (+) 885 WP_328628734.1 RNA polymerase sigma-70 factor -
  OHA88_RS37200 (OHA88_37250) - 8246689..8247456 (+) 768 WP_328628735.1 GntR family transcriptional regulator -
  OHA88_RS37205 (OHA88_37255) - 8247505..8248662 (-) 1158 WP_328628736.1 ROK family transcriptional regulator -
  OHA88_RS37210 (OHA88_37260) vraR 8248762..8249412 (-) 651 WP_267006357.1 response regulator transcription factor Regulator
  OHA88_RS37215 (OHA88_37265) - 8249417..8250589 (-) 1173 WP_328628737.1 histidine kinase -
  OHA88_RS37220 (OHA88_37270) - 8250697..8251635 (+) 939 WP_328628738.1 ATP-binding cassette domain-containing protein -
  OHA88_RS37225 (OHA88_37275) - 8251632..8252375 (+) 744 WP_328629883.1 ABC transporter permease -
  OHA88_RS37230 (OHA88_37280) - 8252498..8252935 (+) 438 WP_328628739.1 hypothetical protein -
  OHA88_RS37235 (OHA88_37285) mug 8253002..8253559 (-) 558 WP_328628740.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23049.94 Da        Isoelectric Point: 6.2687

>NTDB_id=650879 OHA88_RS37210 WP_267006357.1 8248762..8249412(-) (vraR) [Streptomyces sp. NBC_00353]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAGDGAAVIPLVHKLRPDVVAMDVRMPLMDGIEATRVVLRTVPEPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTSKAKAVMKRASLTEREAAV
LRLMARGLSNAEIAAKLVVGVETVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=650879 OHA88_RS37210 WP_267006357.1 8248762..8249412(-) (vraR) [Streptomyces sp. NBC_00353]
ATGCCGGTTACCGTTCTTCTGGTCGACGACGAACCCCTCGTACGCGCGGGGCTGCGCGCGGTCCTTGAGGCTCAGCCCGA
TATCGAGGTGGTGGGCGAGGCGGGCGACGGCGCCGCAGTGATCCCGCTGGTGCACAAGTTGCGCCCCGATGTGGTGGCGA
TGGATGTGCGGATGCCCTTGATGGACGGCATCGAGGCGACCCGGGTGGTGCTGCGCACGGTGCCTGAGCCGCCGAAGATC
CTGGTGGTGACGACATTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCGGACGGCTTTCTGCTCAAGCG
TGCCCGGCCCGCGGAGATCGTGCATGCGGTGCGCCTGGTTGCCGAGGGTGAGTCTCTGCTGTTCCCGGCCGCGGTCCGGC
AGCTCGCCGCCGAGTACGGGACGAGCAAGGCGAAGGCGGTCATGAAGCGGGCCTCGCTCACCGAGCGCGAGGCTGCGGTG
CTCCGGTTGATGGCCCGGGGACTCTCGAATGCGGAGATCGCCGCCAAGCTCGTGGTCGGCGTCGAGACGGTGAAGACCCA
TGTCAGCGCGGTGCTGGCAAAGTTGGGGGCCAGGGATCGGACCCAGGCGGTGATCGCCGCGTACGAGTCCGGCTTCGTGG
CTCCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.935

100

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.384