Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA88_RS37810 Genome accession   NZ_CP107985
Coordinates   8377740..8378435 (+) Length   231 a.a.
NCBI ID   WP_328628813.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8372740..8383435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA88_RS37795 (OHA88_37850) - 8373551..8375041 (-) 1491 WP_328628810.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  OHA88_RS37800 (OHA88_37855) - 8375799..8376293 (+) 495 WP_328628811.1 lamin tail domain-containing protein -
  OHA88_RS37805 (OHA88_37860) - 8376509..8377720 (+) 1212 WP_328628812.1 sensor histidine kinase -
  OHA88_RS37810 (OHA88_37865) vraR 8377740..8378435 (+) 696 WP_328628813.1 response regulator transcription factor Regulator
  OHA88_RS37815 (OHA88_37870) - 8378585..8379523 (+) 939 WP_328628814.1 ATP-binding cassette domain-containing protein -
  OHA88_RS37820 (OHA88_37875) - 8379520..8380338 (+) 819 WP_328628815.1 ABC transporter permease -
  OHA88_RS37825 (OHA88_37880) - 8380655..8381125 (+) 471 WP_328628816.1 zf-HC2 domain-containing protein -
  OHA88_RS37830 (OHA88_37885) - 8381452..8382129 (+) 678 WP_328628817.1 hypothetical protein -
  OHA88_RS37835 (OHA88_37890) - 8382302..8382547 (+) 246 WP_328629890.1 ferredoxin -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24778.48 Da        Isoelectric Point: 4.4062

>NTDB_id=650882 OHA88_RS37810 WP_328628813.1 8377740..8378435(+) (vraR) [Streptomyces sp. NBC_00353]
MTIRVLLADDQALLRGTFRMLFDSADDMETVGEASNGSEAVDLAHAQHPDVLLMDIRMPEMDGLAATRLISESEDLAGVK
VLILTTFEDDEYVAEALRAGASGFLGKGARPEELLDAVRTVAGGEALLCPSAARALITRFLMQPEACPAAMHERLACLTP
RERDVLALVAMGLSNDEIADRLFISPLTAKTHVNRAMTKLDARDRAQLVVIAYQCGLVSPAMEPSGPSTSV

Nucleotide


Download         Length: 696 bp        

>NTDB_id=650882 OHA88_RS37810 WP_328628813.1 8377740..8378435(+) (vraR) [Streptomyces sp. NBC_00353]
ATGACGATCCGCGTACTGCTGGCCGATGACCAGGCCCTGCTTCGGGGCACCTTCCGGATGCTGTTCGATTCTGCGGACGA
CATGGAGACCGTGGGTGAGGCGTCCAACGGCTCCGAGGCAGTGGACCTGGCGCACGCGCAGCACCCCGATGTGCTCCTGA
TGGACATCCGCATGCCCGAGATGGACGGCCTCGCCGCGACGCGGCTGATCAGCGAGTCGGAGGACCTCGCGGGGGTCAAG
GTCCTCATCCTGACCACCTTCGAGGACGACGAGTACGTCGCCGAGGCACTGCGTGCGGGTGCGAGCGGTTTTCTCGGCAA
GGGCGCGCGGCCCGAGGAGCTTCTCGACGCCGTGCGCACGGTCGCCGGCGGGGAGGCACTGCTGTGCCCGTCGGCTGCCC
GAGCGCTGATCACGCGATTTCTGATGCAGCCGGAAGCATGCCCGGCGGCCATGCACGAGCGGCTGGCCTGCCTGACGCCA
CGGGAACGCGATGTCCTGGCACTTGTCGCAATGGGGCTGTCGAACGACGAGATCGCCGATCGCCTGTTCATCAGCCCGCT
GACCGCCAAGACCCACGTCAACCGGGCCATGACCAAGCTGGATGCCCGTGACCGTGCCCAGCTCGTGGTCATCGCCTACC
AGTGCGGACTGGTGAGTCCGGCGATGGAGCCGAGCGGTCCGTCGACATCCGTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.356

94.805

0.364