Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   H020_RS0109610 Genome accession   NZ_AKVY01000001
Coordinates   1824374..1824769 (-) Length   131 a.a.
NCBI ID   WP_000282442.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1819374..1829769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0109575 - 1819637..1820170 (+) 534 WP_000775321.1 DUF402 domain-containing protein -
  H020_RS13625 - 1820524..1820730 (-) 207 WP_000768520.1 transcriptional regulator -
  H020_RS13095 - 1820891..1822197 (+) 1307 Protein_1801 transposase -
  H020_RS0109600 groL 1822296..1823918 (-) 1623 WP_000031573.1 chaperonin GroEL -
  H020_RS0109605 groES 1823934..1824218 (-) 285 WP_000917330.1 co-chaperone GroES -
  H020_RS0109610 ssbB/cilA 1824374..1824769 (-) 396 WP_000282442.1 single-stranded DNA-binding protein Machinery gene
  H020_RS0109615 - 1824847..1825608 (-) 762 WP_001107746.1 SDR family NAD(P)-dependent oxidoreductase -
  H020_RS0109620 ytpR 1825650..1826276 (-) 627 WP_000578285.1 YtpR family tRNA-binding protein -
  H020_RS0109625 - 1826292..1826609 (-) 318 WP_000615765.1 thioredoxin family protein -
  H020_RS0109630 - 1826606..1826905 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  H020_RS14565 - 1826999..1827130 (+) 132 WP_001811306.1 hypothetical protein -
  H020_RS14395 - 1827155..1827235 (-) 81 WP_223200463.1 hypothetical protein -
  H020_RS12065 - 1827242..1827433 (-) 192 WP_000291826.1 cell wall-binding protein -
  H020_RS0109640 - 1827594..1828268 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  H020_RS0109645 - 1828274..1828720 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  H020_RS0109650 - 1828834..1829337 (-) 504 WP_000800931.1 phosphatase PAP2 family protein -
  H020_RS0109655 - 1829334..1829696 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14907.85 Da        Isoelectric Point: 5.9409

>NTDB_id=64951 H020_RS0109610 WP_000282442.1 1824374..1824769(-) (ssbB/cilA) [Streptococcus pneumoniae TIGR4]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=64951 H020_RS0109610 WP_000282442.1 1824374..1824769(-) (ssbB/cilA) [Streptococcus pneumoniae TIGR4]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae D39

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae R6

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

99.237

100

0.992
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment