Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG828_RS47255 Genome accession   NZ_CP107905
Coordinates   10352158..10352823 (-) Length   221 a.a.
NCBI ID   WP_328504669.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10347158..10357823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS47240 (OG828_47215) - 10347526..10348506 (+) 981 WP_328504666.1 xanthine dehydrogenase family protein subunit M -
  OG828_RS47245 (OG828_47220) - 10348503..10350689 (+) 2187 WP_328504667.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
  OG828_RS47250 (OG828_47225) - 10350844..10351986 (+) 1143 WP_328504668.1 XdhC/CoxI family protein -
  OG828_RS47255 (OG828_47230) vraR 10352158..10352823 (-) 666 WP_328504669.1 response regulator transcription factor Regulator
  OG828_RS47260 (OG828_47235) - 10352820..10354091 (-) 1272 WP_328504670.1 histidine kinase -
  OG828_RS47265 (OG828_47240) - 10354156..10355001 (-) 846 WP_328504671.1 ABC transporter permease subunit -
  OG828_RS47270 (OG828_47245) - 10354998..10355936 (-) 939 WP_328504672.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23748.29 Da        Isoelectric Point: 6.1492

>NTDB_id=648659 OG828_RS47255 WP_328504669.1 10352158..10352823(-) (vraR) [Streptomyces sp. NBC_00457]
MSIRVLLADDQALVRASFRMLIESEPDLEVVGEAATGEEAVALARSSRADVVLMDIRMPDMDGLAATRAISADADLVGVR
VLILTTFEADEHVFHALRAGASGFLGKSVELSYLLDAIRLVARGEALLSPRATRTLIAHYLASPDRTGTPPRELTALTDR
ERQVLVLVATGLSNDAIAEQLHISPSTAKTHVNRIMTKLGARDRAQLVVIAYQTGHAHPVA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=648659 OG828_RS47255 WP_328504669.1 10352158..10352823(-) (vraR) [Streptomyces sp. NBC_00457]
ATGAGCATCCGCGTTCTGCTCGCCGACGACCAGGCCCTCGTCCGCGCCAGCTTCCGCATGCTCATCGAGTCGGAGCCGGA
CCTGGAGGTCGTCGGAGAGGCGGCGACGGGCGAAGAGGCGGTCGCGCTGGCCCGCAGCAGCCGTGCCGACGTCGTGCTGA
TGGACATCCGGATGCCGGACATGGACGGCCTCGCCGCCACGCGCGCCATCTCGGCGGACGCGGACCTCGTGGGCGTCCGG
GTGCTGATCCTGACGACCTTCGAAGCCGACGAGCACGTCTTCCACGCGCTGCGTGCCGGGGCCAGCGGGTTCCTCGGAAA
GAGCGTGGAGCTCTCCTACCTCCTCGACGCCATCCGGCTGGTCGCCCGGGGAGAGGCGCTGCTGTCACCCAGGGCGACCA
GGACACTCATCGCGCACTACCTCGCCTCACCCGACAGGACGGGCACTCCGCCCCGGGAGCTGACGGCCCTGACCGACCGC
GAGCGCCAAGTACTCGTCCTTGTGGCCACGGGCCTCTCCAACGACGCCATCGCCGAACAGCTCCACATCTCGCCCTCGAC
CGCCAAGACCCACGTGAACCGCATCATGACCAAGCTCGGCGCCCGGGACCGCGCCCAACTCGTCGTGATCGCCTACCAGA
CCGGCCACGCCCACCCCGTCGCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.498

96.38

0.371