Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS27755 Genome accession   NZ_CP107894
Coordinates   6136999..6137622 (+) Length   207 a.a.
NCBI ID   WP_327686919.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6131999..6142622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS27735 (OG803_27770) - 6132826..6133551 (-) 726 WP_327684963.1 transglycosylase SLT domain-containing protein -
  OG803_RS27740 (OG803_27775) - 6133830..6134891 (-) 1062 WP_327684964.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG803_RS27745 (OG803_27780) - 6134930..6135625 (-) 696 WP_327684965.1 SDR family oxidoreductase -
  OG803_RS27750 (OG803_27785) - 6135841..6136985 (+) 1145 Protein_5473 GAF domain-containing sensor histidine kinase -
  OG803_RS27755 (OG803_27790) vraR 6136999..6137622 (+) 624 WP_327686919.1 response regulator transcription factor Regulator
  OG803_RS27760 (OG803_27795) - 6137762..6138010 (+) 249 WP_327684966.1 chaplin -
  OG803_RS27765 (OG803_27800) - 6138476..6139255 (-) 780 WP_327684967.1 hypothetical protein -
  OG803_RS27770 (OG803_27805) - 6139391..6140182 (+) 792 WP_327684968.1 ABC transporter ATP-binding protein -
  OG803_RS27775 (OG803_27810) - 6140373..6140801 (+) 429 WP_327684969.1 NfeD family protein -
  OG803_RS27780 (OG803_27815) - 6140893..6141825 (+) 933 WP_313947160.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22371.51 Da        Isoelectric Point: 5.3711

>NTDB_id=648217 OG803_RS27755 WP_327686919.1 6136999..6137622(+) (vraR) [Streptomyces sp. NBC_00467]
MLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGDEGVARAEELKPDVVLMDVKMPGTDGIEALRKLRDLSNPARVLIVTS
FTEQRTVVPALRAGASGYVYKDVDPEALARAIRSVHAGHVLLQPEVAGALLSQDEPGNGTGRGGSLTEREKEVLGLIADG
RSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=648217 OG803_RS27755 WP_327686919.1 6136999..6137622(+) (vraR) [Streptomyces sp. NBC_00467]
GTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGTGGGCTGCGCACCTTCCTCGAGGTCCAGGACGACATCGAGGTGGT
CGGTGAGGCGGCCGACGGGGACGAGGGCGTGGCCCGCGCGGAGGAACTGAAACCGGACGTCGTCCTGATGGACGTGAAGA
TGCCCGGCACCGACGGCATCGAGGCCCTGCGCAAGCTGCGTGACCTCTCCAACCCGGCCCGCGTGCTGATCGTCACCAGC
TTCACCGAGCAGCGCACGGTGGTCCCCGCCCTGCGGGCCGGCGCTTCGGGCTACGTCTACAAGGACGTCGACCCGGAGGC
CCTCGCCCGCGCCATCCGCTCCGTCCACGCGGGCCATGTACTGCTCCAGCCCGAGGTCGCGGGCGCGCTGCTGTCCCAGG
ACGAGCCGGGCAACGGCACGGGCCGCGGGGGTTCGCTCACGGAGCGCGAGAAGGAGGTGCTCGGCCTGATCGCGGACGGC
CGGTCCAACCGCGAGATCGCCCGCGCGCTCGTCCTGTCCGAGAAGACCGTCAAGACGCACGTCTCGAACATCCTGATGAA
GCTGGACCTCGCGGACCGCACACAGGCGGCGCTGTGGGCCGTACGGCACGGATTGACCAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-200)

Response regulator receiver domain (Response_reg)

(2-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.366

99.034

0.449
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.406