Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   SPB_RS09105 Genome accession   NZ_AEUT02000001
Coordinates   1816204..1817145 (-) Length   313 a.a.
NCBI ID   WP_003102925.1    Uniprot ID   A0AAE4HV74
Organism   Streptococcus parauberis NCFD 2020     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1811204..1822145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS09070 (SPB_1873) comYH 1812293..1813249 (-) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  SPB_RS09075 (SPB_1874) comGG 1813401..1813853 (-) 453 WP_003105699.1 competence type IV pilus minor pilin ComGG -
  SPB_RS09080 (SPB_1875) comGF 1813831..1814268 (-) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF -
  SPB_RS09085 (SPB_1876) comGE 1814246..1814545 (-) 300 WP_003104125.1 competence type IV pilus minor pilin ComGE -
  SPB_RS11605 (SPB_1877) comGD 1814517..1814960 (-) 444 WP_307877782.1 competence type IV pilus minor pilin ComGD -
  SPB_RS09095 (SPB_1878) comYC 1814914..1815240 (-) 327 WP_003104947.1 competence type IV pilus major pilin ComGC Machinery gene
  SPB_RS09100 (SPB_1879) comYB 1815237..1816292 (-) 1056 WP_076751810.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPB_RS09105 (SPB_1880) comYA 1816204..1817145 (-) 942 WP_003102925.1 competence type IV pilus ATPase ComGA Machinery gene
  SPB_RS09110 (SPB_1881) - 1817199..1817573 (-) 375 WP_003103833.1 DUF1033 family protein -
  SPB_RS09115 (SPB_1882) rpoC 1817677..1821309 (-) 3633 WP_279386803.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36264.68 Da        Isoelectric Point: 6.9163

>NTDB_id=64569 SPB_RS09105 WP_003102925.1 1816204..1817145(-) (comYA) [Streptococcus parauberis NCFD 2020]
MIQGLGKQIISEAMELQVQDIYILPEENGYQLFFRIHDERQKLENFQTSQLQQLMSHFKFLAGMNVGEKRRCQLGSCNYD
IDDSISISLRLSTVGDYRGRESMVIRILYPYQENQTYWEDMDEKINQFIIGRGLYLFAGPVGSGKTSLMYRLIEKNFHDR
QVITIEDPVEIKNPKFLQLQVNDSIGMTYDNLIKLSLRHRPDILVIGEIRDRETAQAVIRASLTGIMVFSTVHAKSIPGV
YYRLLELGINQNELENALRLIVYQRLMGGKGLIDFTNKNYISHSHEKWNQAIDQLVAKGHFPEEKGEKEKIIK

Nucleotide


Download         Length: 942 bp        

>NTDB_id=64569 SPB_RS09105 WP_003102925.1 1816204..1817145(-) (comYA) [Streptococcus parauberis NCFD 2020]
ATGATCCAAGGTTTGGGTAAGCAAATAATAAGTGAAGCGATGGAGTTGCAAGTTCAAGATATCTATATTTTACCTGAAGA
GAATGGGTATCAATTGTTTTTCCGAATTCATGATGAAAGGCAAAAATTAGAAAATTTTCAAACAAGTCAATTACAACAAT
TAATGAGTCATTTTAAGTTTTTGGCTGGTATGAATGTTGGCGAAAAAAGAAGGTGTCAGTTAGGTTCTTGTAATTATGAT
ATAGATGATTCTATATCAATCTCATTAAGACTTTCTACAGTTGGTGATTATCGTGGGCGTGAAAGTATGGTTATTCGTAT
TCTTTATCCTTATCAAGAGAATCAAACCTATTGGGAGGATATGGATGAAAAAATTAATCAATTTATAATCGGACGTGGAC
TCTATCTTTTTGCTGGACCAGTTGGATCAGGTAAAACAAGTCTAATGTATAGACTTATTGAGAAAAATTTCCATGACAGG
CAAGTGATTACGATTGAGGATCCAGTTGAAATAAAGAATCCCAAATTCTTACAATTACAAGTTAATGATAGTATTGGAAT
GACTTATGATAATCTCATAAAGTTATCTCTGCGTCATCGACCGGATATTTTAGTAATTGGTGAAATTCGAGATAGGGAGA
CTGCACAGGCTGTGATTAGAGCAAGTTTAACAGGAATTATGGTCTTTTCAACAGTACATGCAAAAAGTATTCCAGGGGTA
TATTATCGCCTTTTAGAATTAGGAATTAATCAAAATGAATTAGAAAACGCCTTAAGATTAATAGTTTATCAAAGATTAAT
GGGAGGGAAAGGTTTAATTGATTTTACTAACAAAAACTATATTAGTCATTCGCATGAAAAATGGAATCAAGCTATTGATC
AGTTGGTTGCAAAAGGACATTTCCCTGAAGAAAAAGGGGAAAAAGAAAAGATTATCAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.218

99.681

0.61
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.29

99.042

0.607
  comYA Streptococcus mutans UA140

60.897

99.681

0.607
  comYA Streptococcus gordonii str. Challis substr. CH1

57.235

99.361

0.569
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus pneumoniae D39

56.09

99.681

0.559
  comGA/cglA/cilD Streptococcus pneumoniae R6

56.09

99.681

0.559
  comGA Lactococcus lactis subsp. cremoris KW2

51.447

99.361

0.511
  comGA Latilactobacillus sakei subsp. sakei 23K

42.545

87.859

0.374

Multiple sequence alignment