Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SPB_RS09100 Genome accession   NZ_AEUT02000001
Coordinates   1815237..1816292 (-) Length   351 a.a.
NCBI ID   WP_076751810.1    Uniprot ID   A0AAE4HVE3
Organism   Streptococcus parauberis NCFD 2020     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1810237..1821292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS09055 (SPB_1870) - 1810276..1810728 (-) 453 WP_003104510.1 hypothetical protein -
  SPB_RS09060 (SPB_1871) - 1810721..1810933 (-) 213 WP_003105344.1 helix-turn-helix transcriptional regulator -
  SPB_RS09065 (SPB_1872) - 1811044..1812237 (-) 1194 WP_003102855.1 acetate kinase -
  SPB_RS09070 (SPB_1873) comYH 1812293..1813249 (-) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  SPB_RS09075 (SPB_1874) comGG 1813401..1813853 (-) 453 WP_003105699.1 competence type IV pilus minor pilin ComGG -
  SPB_RS09080 (SPB_1875) comGF 1813831..1814268 (-) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF -
  SPB_RS09085 (SPB_1876) comGE 1814246..1814545 (-) 300 WP_003104125.1 competence type IV pilus minor pilin ComGE -
  SPB_RS11605 (SPB_1877) comGD 1814517..1814960 (-) 444 WP_307877782.1 competence type IV pilus minor pilin ComGD -
  SPB_RS09095 (SPB_1878) comYC 1814914..1815240 (-) 327 WP_003104947.1 competence type IV pilus major pilin ComGC Machinery gene
  SPB_RS09100 (SPB_1879) comYB 1815237..1816292 (-) 1056 WP_076751810.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPB_RS09105 (SPB_1880) comYA 1816204..1817145 (-) 942 WP_003102925.1 competence type IV pilus ATPase ComGA Machinery gene
  SPB_RS09110 (SPB_1881) - 1817199..1817573 (-) 375 WP_003103833.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40420.47 Da        Isoelectric Point: 9.8777

>NTDB_id=64568 SPB_RS09100 WP_076751810.1 1815237..1816292(-) (comYB) [Streptococcus parauberis NCFD 2020]
MKNGIKLLISWLQKDISLKKKGKKKRLSSKKQYQLIQLLHNLQASGFNLVEMVSFLKKSKLISEEQVKIMEFHMLNGSSL
SKIMLDLGYPDSIITQLSLAELHGNILGSLENIETYLLQVNHIKKKTFEVVMYPLVLLFFLTTILLGLRQYLLPSLNEEG
PLMFLLTYFPHLLIILIVIILFVSIVVIYKWRRSSPLKLISQISRLPLIGYVIQLYMTAFYAREWGNLLDQGLELSTILS
VMSKEKSLLVREIGIEMNSAFVEGIPFEQKVLDYPFFKNELSLIISYGQVKSKLGKELEIYSQNTWESYFRFLIQLTQLI
QPIVFLAVALIIVMIYAAMLLPIYQNMGGNL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=64568 SPB_RS09100 WP_076751810.1 1815237..1816292(-) (comYB) [Streptococcus parauberis NCFD 2020]
ATGAAAAATGGAATCAAGCTATTGATCAGTTGGTTGCAAAAGGACATTTCCCTGAAGAAAAAGGGGAAAAAGAAAAGATT
ATCAAGTAAAAAACAATATCAACTTATCCAATTGTTACATAATCTCCAAGCAAGCGGATTTAATTTAGTTGAAATGGTAT
CTTTTCTGAAGAAAAGTAAATTAATATCTGAAGAGCAGGTTAAAATTATGGAATTTCACATGCTCAATGGTAGTAGTTTA
TCAAAAATCATGCTTGATTTAGGTTACCCAGATAGTATTATAACTCAATTGAGTTTAGCAGAATTACATGGGAATATTTT
GGGGAGTCTTGAAAATATAGAAACATACCTTTTGCAAGTGAATCATATTAAAAAGAAAACTTTCGAAGTGGTAATGTATC
CACTTGTATTACTATTTTTTCTAACAACTATACTACTTGGTTTGAGACAATATTTATTGCCTTCGCTTAATGAGGAAGGT
CCACTTATGTTCCTACTAACCTATTTTCCTCACCTTTTAATAATCCTAATTGTGATAATCCTCTTTGTCTCTATAGTAGT
TATTTATAAATGGCGACGCAGTTCACCACTCAAGCTAATTAGCCAAATTAGTCGATTGCCTTTAATAGGATACGTCATCC
AGTTATATATGACAGCCTTCTATGCTCGAGAATGGGGAAATTTATTAGATCAGGGGCTTGAATTAAGTACGATTTTGTCT
GTTATGAGTAAGGAAAAATCACTTTTGGTACGGGAAATAGGTATAGAAATGAATAGTGCTTTTGTAGAGGGGATTCCGTT
TGAGCAAAAGGTACTAGATTATCCATTTTTTAAAAATGAATTGAGTTTAATTATTTCATATGGACAAGTTAAATCAAAAT
TAGGGAAGGAGTTAGAAATATATTCTCAAAATACATGGGAGTCTTACTTCAGGTTCCTCATACAACTTACTCAGCTGATT
CAACCAATTGTATTTTTAGCAGTTGCTCTAATTATTGTCATGATTTATGCAGCAATGCTATTGCCAATTTATCAAAATAT
GGGAGGAAATTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(36-154)

Type II secretion system (T2SS), protein F (T2SSF)

(222-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

51.304

98.291

0.504
  comYB Streptococcus mutans UA159

51.304

98.291

0.504
  comYB Streptococcus gordonii str. Challis substr. CH1

47.368

97.436

0.462
  comGB/cglB Streptococcus mitis NCTC 12261

46.765

96.866

0.453
  comGB/cglB Streptococcus mitis SK321

45.401

96.011

0.436
  comGB/cglB Streptococcus pneumoniae Rx1

45.104

96.011

0.433
  comGB/cglB Streptococcus pneumoniae D39

45.104

96.011

0.433
  comGB/cglB Streptococcus pneumoniae R6

45.104

96.011

0.433
  comGB/cglB Streptococcus pneumoniae TIGR4

45.104

96.011

0.433
  comGB Lactococcus lactis subsp. cremoris KW2

41.935

97.151

0.407

Multiple sequence alignment