Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SPB_RS09095 Genome accession   NZ_AEUT02000001
Coordinates   1814914..1815240 (-) Length   108 a.a.
NCBI ID   WP_003104947.1    Uniprot ID   F1Z0F6
Organism   Streptococcus parauberis NCFD 2020     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809914..1820240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS09055 (SPB_1870) - 1810276..1810728 (-) 453 WP_003104510.1 hypothetical protein -
  SPB_RS09060 (SPB_1871) - 1810721..1810933 (-) 213 WP_003105344.1 helix-turn-helix transcriptional regulator -
  SPB_RS09065 (SPB_1872) - 1811044..1812237 (-) 1194 WP_003102855.1 acetate kinase -
  SPB_RS09070 (SPB_1873) comYH 1812293..1813249 (-) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  SPB_RS09075 (SPB_1874) comGG 1813401..1813853 (-) 453 WP_003105699.1 competence type IV pilus minor pilin ComGG -
  SPB_RS09080 (SPB_1875) comGF 1813831..1814268 (-) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF -
  SPB_RS09085 (SPB_1876) comGE 1814246..1814545 (-) 300 WP_003104125.1 competence type IV pilus minor pilin ComGE -
  SPB_RS11605 (SPB_1877) comGD 1814517..1814960 (-) 444 WP_307877782.1 competence type IV pilus minor pilin ComGD -
  SPB_RS09095 (SPB_1878) comYC 1814914..1815240 (-) 327 WP_003104947.1 competence type IV pilus major pilin ComGC Machinery gene
  SPB_RS09100 (SPB_1879) comYB 1815237..1816292 (-) 1056 WP_076751810.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPB_RS09105 (SPB_1880) comYA 1816204..1817145 (-) 942 WP_003102925.1 competence type IV pilus ATPase ComGA Machinery gene
  SPB_RS09110 (SPB_1881) - 1817199..1817573 (-) 375 WP_003103833.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12310.62 Da        Isoelectric Point: 10.1690

>NTDB_id=64567 SPB_RS09095 WP_003104947.1 1814914..1815240(-) (comYC) [Streptococcus parauberis NCFD 2020]
MKKFIINFKNKSVQAFTLLEMLMVILIISILMLLFIPNLNKQKEKVLNTGGEALVKIVENQAELYALNNAGKVPSLNDLK
SNVNLTEKQITAYNDYYKKHSDKIPNVK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=64567 SPB_RS09095 WP_003104947.1 1814914..1815240(-) (comYC) [Streptococcus parauberis NCFD 2020]
ATGAAAAAATTTATTATTAATTTTAAAAACAAATCAGTACAAGCATTCACTCTTTTAGAGATGCTAATGGTTATTCTTAT
TATTTCTATACTGATGCTCTTATTTATTCCAAATTTAAACAAACAAAAAGAAAAAGTCTTGAATACCGGAGGAGAGGCTC
TAGTTAAAATAGTTGAAAATCAAGCTGAACTCTATGCATTGAATAATGCTGGCAAAGTGCCATCATTAAATGATTTAAAG
AGCAATGTAAATTTAACAGAAAAGCAAATAACCGCTTATAATGATTATTATAAAAAACACAGTGATAAAATCCCAAATGT
TAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1Z0F6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

56.25

88.889

0.5
  comYC Streptococcus mutans UA159

56.25

88.889

0.5
  comGC/cglC Streptococcus mitis SK321

52.475

93.519

0.491
  comGC/cglC Streptococcus mitis NCTC 12261

51

92.593

0.472
  comGC/cglC Streptococcus pneumoniae TIGR4

50.495

93.519

0.472
  comGC/cglC Streptococcus pneumoniae R6

50.495

93.519

0.472
  comGC/cglC Streptococcus pneumoniae D39

50.495

93.519

0.472
  comGC/cglC Streptococcus pneumoniae Rx1

50.495

93.519

0.472
  comYC Streptococcus gordonii str. Challis substr. CH1

53.684

87.963

0.472
  comGC Lactococcus lactis subsp. cremoris KW2

51.042

88.889

0.454

Multiple sequence alignment