Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SPB_RS09070 Genome accession   NZ_AEUT02000001
Coordinates   1812293..1813249 (-) Length   318 a.a.
NCBI ID   WP_003103712.1    Uniprot ID   A0A0E2UAX9
Organism   Streptococcus parauberis NCFD 2020     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807293..1818249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS09040 (SPB_1867) pepA 1807748..1808815 (+) 1068 WP_003105090.1 glutamyl aminopeptidase -
  SPB_RS09045 (SPB_1868) proC 1808827..1809597 (+) 771 WP_003104671.1 pyrroline-5-carboxylate reductase -
  SPB_RS09050 (SPB_1869) - 1809614..1810267 (-) 654 WP_003104674.1 CPBP family intramembrane glutamic endopeptidase -
  SPB_RS09055 (SPB_1870) - 1810276..1810728 (-) 453 WP_003104510.1 hypothetical protein -
  SPB_RS09060 (SPB_1871) - 1810721..1810933 (-) 213 WP_003105344.1 helix-turn-helix transcriptional regulator -
  SPB_RS09065 (SPB_1872) - 1811044..1812237 (-) 1194 WP_003102855.1 acetate kinase -
  SPB_RS09070 (SPB_1873) comYH 1812293..1813249 (-) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  SPB_RS09075 (SPB_1874) comGG 1813401..1813853 (-) 453 WP_003105699.1 competence type IV pilus minor pilin ComGG -
  SPB_RS09080 (SPB_1875) comGF 1813831..1814268 (-) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF -
  SPB_RS09085 (SPB_1876) comGE 1814246..1814545 (-) 300 WP_003104125.1 competence type IV pilus minor pilin ComGE -
  SPB_RS11605 (SPB_1877) comGD 1814517..1814960 (-) 444 WP_307877782.1 competence type IV pilus minor pilin ComGD -
  SPB_RS09095 (SPB_1878) comYC 1814914..1815240 (-) 327 WP_003104947.1 competence type IV pilus major pilin ComGC Machinery gene
  SPB_RS09100 (SPB_1879) comYB 1815237..1816292 (-) 1056 WP_076751810.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPB_RS09105 (SPB_1880) comYA 1816204..1817145 (-) 942 WP_003102925.1 competence type IV pilus ATPase ComGA Machinery gene
  SPB_RS09110 (SPB_1881) - 1817199..1817573 (-) 375 WP_003103833.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36032.20 Da        Isoelectric Point: 4.9473

>NTDB_id=64566 SPB_RS09070 WP_003103712.1 1812293..1813249(-) (comYH) [Streptococcus parauberis NCFD 2020]
MNFEKIEKAFELILENSQLIETDLHTHIYDAIIEQNSYLLGAKGANKQVEGNIQALKELHLTKEEWRRAFQFVFIKASQT
ERLQANHQFTPDSLGFILLYMMETLVSNHSFDLLEIGSGTGNLAQTILNNTSKSIDYLGIELDDLLIDLSASISEIMDSS
AKFLQEDAVRPQILKVSDVIISDLPVGYYPNDDIASRYKVASKEEHTYAHHLLMEQSLKYLKEGGYAIFLAPTNILTSPQ
SDLLKQWLKNYAQVMAVVTLPETMFGNPNNAKSIFVLGKTKNQAVETFVFPITNIQSTELIQDFMNKFKNWKLANVIS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=64566 SPB_RS09070 WP_003103712.1 1812293..1813249(-) (comYH) [Streptococcus parauberis NCFD 2020]
ATGAATTTTGAAAAAATAGAAAAAGCCTTTGAGCTTATTTTAGAGAATAGTCAGCTTATTGAAACGGACTTACATACACA
TATTTATGATGCAATTATTGAACAAAATTCCTACTTATTGGGTGCAAAAGGGGCAAACAAACAAGTTGAAGGAAATATTC
AAGCATTAAAAGAATTACACTTAACAAAAGAAGAATGGCGACGTGCCTTTCAATTTGTATTTATTAAGGCCTCACAGACC
GAGAGATTGCAAGCCAATCATCAATTTACTCCAGACAGTCTTGGTTTTATCTTGCTCTATATGATGGAGACTTTAGTATC
TAATCATTCATTTGATTTATTAGAAATTGGTAGTGGAACTGGTAATTTGGCTCAAACTATCTTAAACAATACGAGTAAGT
CTATTGACTATCTTGGTATTGAGCTGGATGACTTGCTTATCGATTTATCAGCAAGTATTTCTGAAATAATGGATTCTTCT
GCAAAATTTTTACAGGAAGATGCTGTGAGACCACAAATTCTTAAAGTAAGTGATGTTATCATTAGTGACTTACCAGTTGG
TTATTACCCAAATGACGATATAGCAAGTCGTTATAAAGTAGCTAGTAAGGAAGAGCATACTTATGCTCACCATTTATTAA
TGGAACAGTCATTGAAGTATCTAAAAGAAGGTGGTTATGCTATATTTTTAGCTCCAACTAATATTTTAACTAGTCCACAA
AGCGATCTGTTGAAGCAATGGTTAAAAAACTATGCCCAGGTTATGGCAGTTGTTACTTTACCTGAAACGATGTTTGGCAA
TCCAAATAATGCCAAGTCGATTTTTGTCTTAGGAAAAACGAAAAATCAAGCGGTTGAAACATTTGTCTTTCCAATTACTA
ACATTCAATCCACAGAGCTTATTCAAGATTTCATGAACAAGTTTAAAAATTGGAAACTTGCTAATGTCATTTCATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(78-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2UAX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

63.608

99.371

0.632
  comYH Streptococcus mutans UA159

63.291

99.371

0.629

Multiple sequence alignment