Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   L0992_RS14680 Genome accession   NZ_CP090854
Coordinates   3304158..3305876 (-) Length   572 a.a.
NCBI ID   WP_128644404.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3299158..3310876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS14660 (L0992_14655) - 3299837..3300682 (-) 846 WP_373949018.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  L0992_RS14665 (L0992_14660) - 3300752..3302269 (-) 1518 WP_373949020.1 AAA family ATPase -
  L0992_RS14670 (L0992_14665) aroB 3302349..3303437 (-) 1089 WP_017061124.1 3-dehydroquinate synthase -
  L0992_RS14675 (L0992_14670) aroK 3303463..3303981 (-) 519 WP_009848907.1 shikimate kinase AroK -
  L0992_RS14680 (L0992_14675) pilQ 3304158..3305876 (-) 1719 WP_128644404.1 type IV pilus secretin PilQ Machinery gene
  L0992_RS14685 (L0992_14680) pilP 3305912..3306430 (-) 519 WP_373951505.1 pilus assembly protein PilP Machinery gene
  L0992_RS14690 (L0992_14685) pilO 3306417..3307028 (-) 612 WP_373949023.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0992_RS14695 (L0992_14690) pilN 3307021..3307620 (-) 600 WP_373949025.1 PilN domain-containing protein Machinery gene
  L0992_RS14700 (L0992_14695) pilM 3307604..3308629 (-) 1026 WP_265973894.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 62150.78 Da        Isoelectric Point: 4.3615

>NTDB_id=645270 L0992_RS14680 WP_128644404.1 3304158..3305876(-) (pilQ) [Vibrio pomeroyi strain YSX02]
MNKGISGLVSKALQGFAVSVMLVFSVLSHAESLPNKLENIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQ
VDDDKLYLLDVKDFATLVEGIEVYKETPSTRLLATINNDYQYEYNLKGRFIEVVISKPVIDETTAEKSILEKEGKLISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFTVGGSIEGNHPSQITPYDDDGGNSVIDDYLNVNLGATSPNASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPVLGDLPLLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=645270 L0992_RS14680 WP_128644404.1 3304158..3305876(-) (pilQ) [Vibrio pomeroyi strain YSX02]
ATGAATAAAGGAATAAGTGGATTAGTGAGCAAGGCTCTACAAGGTTTTGCTGTGTCTGTGATGTTGGTTTTTAGCGTACT
CAGCCACGCAGAGAGCTTGCCTAATAAATTAGAGAATATTGATTTTAGGGTTAATAAGGATAAAGACGCCGTCATCATTA
TTGAATTAGCCACCAGTACCGCGGTGGTCGATGTGCAGCGTGCTCAGGAAGGCTTAAGTATAGAGTTACTTAACACTCAG
GTTGATGACGACAAACTCTACCTTCTGGATGTGAAAGATTTCGCCACCTTAGTTGAAGGGATTGAAGTCTATAAAGAGAC
ACCGAGCACTCGGCTCCTCGCGACCATCAATAATGACTACCAGTATGAATACAACCTAAAAGGTCGCTTCATTGAGGTGG
TGATCAGTAAGCCGGTTATCGATGAAACGACCGCTGAGAAAAGCATCCTAGAGAAAGAGGGCAAGCTGATCTCAATTAAC
TTCCAAGATATCCCAGTACGAAACGTCCTTCAGTTGATCGCTGACTATAACGACTTCAACCTTGTCGTGTCTGACTCGGT
CGCGGGTAACCTGACTTTACGTTTAGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGATTGG
ATAAGCGCGTGGATGGCAATGTCATCTTGGTTGCGCCGAAAGCTGAGTTGGATCTTCGAGAGCAGCAAGCGCTCGAGAAA
TCTCGTTTGGAAGAGGAGTTGGGAGAGCTCAAGTCGGAAATCATCAAGATCAACTTTGCTAAAGCCACCGACATCGCTGA
CATGATTGGCGGTGAGGGTGCGGTGAGTATGTTGTCTGATAGGGGCTCTATTACCATTGATGAGCGCACCAACTCTTTGT
TGATCCGTGAGTTGGAAGAGAACATTGCCGTGATAAGAGGCATTATTGAATCCTTGGATATCCCAGTGAAGCAGGTGCAA
ATAGAGGCGCGTATCGTGACCGTCACTGAAGGTAATCTTGATGAGCTTGGTGTGCGCTGGGGTGTATCCTCGACCAACGG
AAGCTTCACTGTTGGTGGTTCAATAGAAGGTAATCATCCATCACAAATCACGCCGTATGACGATGATGGCGGCAATAGTG
TGATTGATGACTACCTCAATGTTAACTTGGGGGCGACATCGCCGAATGCATCGAGTATTGCCTTTCAGGTGGCCAAGCTT
GGCTCGGATACGCTGCTCGACCTTGAGCTGTCGGCACTGCAACAAGAGTCGAAAGCTGAGATCATTTCTAGCCCACGCTT
AATCACCACCAATAAAAAGCCCGCTTATATTGAGCAAGGTACTGAAATTCCTTACTTAGAGTCCTCTTCAAGTGGTGCAA
CGTCGGTCGCATTTAAGAAAGCGGTATTGAGCCTTAAAGTGACGCCGCAGATCACGCCCGACAATCGCTTGGTATTGGAT
TTGAGTGTGACTCAAGATAGACCCGGACAAGTGGTAAAAACCGGAACTGGGGAAGCGGTCGCGATAGATACCCAAAGAAT
AGGCACGCAAGTGCTTGTTAATAATGGTGAAACGGTCGTTCTTGGTGGGATATTTCAACACAGCGTGAGCAGCACAGTCG
ATAAAGTTCCTGTGTTGGGAGACCTACCTTTGTTAGGTGCATTGTTCCGTCGCAGCTACGAAAATGTGGGCAAAAGTGAA
CTGCTTATTTTTGTCACGCCTAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

77.003

100

0.773
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.003

100

0.773
  pilQ Vibrio campbellii strain DS40M4

80.699

95.105

0.767
  pilQ Legionella pneumophila strain ERS1305867

42.491

95.455

0.406
  pilQ Legionella pneumophila strain Lp02

42.491

95.455

0.406
  pilQ Pseudomonas aeruginosa PAK

40.754

97.378

0.397
  comQ Acinetobacter baylyi ADP1

38.515

100

0.39
  pilQ Acinetobacter baumannii D1279779

37.478

100

0.379
  pilQ Acinetobacter baumannii strain A118

37.478

100

0.379