Detailed information NTG0645274

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: L0992_RS14700
• Genome accession: NZ_CP090854
• Coordinates: 3307604..3308629 (-)
• Length: 341 a.a.
• NCBI ID: WP_265973894.1
• Uniprot ID: -
• Organism: Vibrio pomeroyi strain YSX02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3302604..3313629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0992_RS14675 (L0992_14670)	aroK	3303463..3303981 (-)	519	WP_009848907.1	shikimate kinase AroK	-
L0992_RS14680 (L0992_14675)	pilQ	3304158..3305876 (-)	1719	WP_128644404.1	type IV pilus secretin PilQ	Machinery gene
L0992_RS14685 (L0992_14680)	pilP	3305912..3306430 (-)	519	WP_373951505.1	pilus assembly protein PilP	Machinery gene
L0992_RS14690 (L0992_14685)	pilO	3306417..3307028 (-)	612	WP_373949023.1	type 4a pilus biogenesis protein PilO	Machinery gene
L0992_RS14695 (L0992_14690)	pilN	3307021..3307620 (-)	600	WP_373949025.1	PilN domain-containing protein	Machinery gene
L0992_RS14700 (L0992_14695)	pilM	3307604..3308629 (-)	1026	WP_265973894.1	type IV pilus assembly protein PilM	Machinery gene
L0992_RS14705 (L0992_14700)	-	3308781..3311342 (+)	2562	WP_373949026.1	penicillin-binding protein 1A	-
L0992_RS14710 (L0992_14705)	oxyR	3311435..3312328 (-)	894	WP_373949028.1	DNA-binding transcriptional regulator OxyR	-
L0992_RS14715 (L0992_14710)	-	3312327..3312506 (+)	180	WP_128644403.1	hypothetical protein	-
L0992_RS14720 (L0992_14715)	-	3312551..3313279 (+)	729	WP_048659171.1	glutathione peroxidase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38194.70 Da
• Isoelectric Point: 6.7737

>NTDB_id=645274 L0992_RS14700 WP_265973894.1 3307604..3308629(-) (pilM) [Vibrio pomeroyi strain YSX02]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRADALTKAGFKP
VVVDTQAHGLLNIWQLASRLYPDKKNWLLVDVGIDQTSLGVIPQSSAPFYKDIAFGTQDLRSSDNPSDIEGVFGTAEDTH
RFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASIPMVTEELERHFQLSCESLNPLSLFENKVAKRRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=645274 L0992_RS14700 WP_265973894.1 3307604..3308629(-) (pilM) [Vibrio pomeroyi strain YSX02]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCCGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGACTGCCTTTTGGCTGTCGCAACGTCGCCATTTCGGTACCAGATAACACA
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAGTTAGAAGACAGAGAAAAAGAGTTTTCGATCTATCAAACCTTTGCTCA
CCAGTCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGATCGACAA
GCAGTTATCAAGTGTATGCCACTCGCAAGGAAGTGGTCGATAGCCGAGCTGATGCGCTAACTAAAGCAGGCTTTAAACCT
GTGGTCGTGGATACGCAGGCTCACGGGCTGCTTAATATCTGGCAATTGGCTTCGCGCTTGTATCCCGATAAGAAGAACTG
GTTGCTGGTGGATGTTGGAATCGACCAAACCTCGCTAGGGGTTATCCCGCAGAGTTCAGCACCTTTTTATAAAGATATCG
CCTTTGGCACTCAAGATCTTCGCAGCTCGGATAACCCGAGTGATATAGAAGGCGTGTTCGGCACGGCTGAAGATACCCAC
CGATTTATTGTCAATTTGATCGAAAAGCTCAAGCGTCAGTTGCAGCTCTATTCTTCAGTCAATGCACTTCAGCCTATTTC
AGGAATCTGGTTAATGGGCGAGGGAGCTAGCATCCCGATGGTTACTGAAGAGCTAGAGCGCCATTTTCAGTTGAGCTGTG
AGTCGCTTAATCCTTTATCTCTGTTTGAGAACAAAGTGGCGAAGCGACGTCGACTGCCCATGGACTGGCAACACTTTGGC
ATTGCCGCGGGTATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-220)

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	55.132	100	0.551
pilM	Vibrio campbellii strain DS40M4	47.953	100	0.481