Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L0992_RS14685 Genome accession   NZ_CP090854
Coordinates   3305912..3306430 (-) Length   172 a.a.
NCBI ID   WP_373951505.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3300912..3311430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS14670 (L0992_14665) aroB 3302349..3303437 (-) 1089 WP_017061124.1 3-dehydroquinate synthase -
  L0992_RS14675 (L0992_14670) aroK 3303463..3303981 (-) 519 WP_009848907.1 shikimate kinase AroK -
  L0992_RS14680 (L0992_14675) pilQ 3304158..3305876 (-) 1719 WP_128644404.1 type IV pilus secretin PilQ Machinery gene
  L0992_RS14685 (L0992_14680) pilP 3305912..3306430 (-) 519 WP_373951505.1 pilus assembly protein PilP Machinery gene
  L0992_RS14690 (L0992_14685) pilO 3306417..3307028 (-) 612 WP_373949023.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0992_RS14695 (L0992_14690) pilN 3307021..3307620 (-) 600 WP_373949025.1 PilN domain-containing protein Machinery gene
  L0992_RS14700 (L0992_14695) pilM 3307604..3308629 (-) 1026 WP_265973894.1 type IV pilus assembly protein PilM Machinery gene
  L0992_RS14705 (L0992_14700) - 3308781..3311342 (+) 2562 WP_373949026.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19192.38 Da        Isoelectric Point: 10.6605

>NTDB_id=645271 L0992_RS14685 WP_373951505.1 3305912..3306430(-) (pilP) [Vibrio pomeroyi strain YSX02]
MKPNSVLYSIVLLLVLSGCKANQDSLEDFVVQVEAKARKDVEQLVPATEFLAATYQRRAFRPPFELPKEAIVQNQPLVKK
DCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGNVVNVKKGQFIGLNNGRVTKVTSQYVQINETLPDGLG
CWHKRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=645271 L0992_RS14685 WP_373951505.1 3305912..3306430(-) (pilP) [Vibrio pomeroyi strain YSX02]
ATGAAACCCAATAGCGTGCTCTACTCAATCGTGTTGCTGCTTGTGCTGTCAGGCTGCAAAGCCAATCAAGATTCACTCGA
AGACTTTGTAGTGCAGGTTGAAGCCAAGGCGAGAAAAGACGTTGAGCAACTTGTCCCTGCGACTGAGTTCTTGGCTGCGA
CTTATCAGCGCCGAGCTTTTCGTCCTCCCTTTGAACTTCCCAAAGAAGCCATTGTGCAAAACCAGCCTTTGGTTAAGAAA
GACTGTTGGCAACCTAGCGCTCGCTCTCGTAACGGAAAGCTAGAGAAGTACCCACTTAGCAAGTTGCGTTTAAGAGGCGT
GATGGGCAGTGGGTCAAGTGTATTTGGGCTAGTGCAAACACCGAAAGGCAACGTGGTAAACGTCAAGAAAGGCCAGTTTA
TCGGCCTAAACAATGGCCGAGTTACTAAGGTGACGAGCCAGTACGTTCAGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCATAAGCGCAACGTTAGGCTGGCTCTGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

63.19

94.767

0.599
  pilP Vibrio campbellii strain DS40M4

55.03

98.256

0.541