Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   L0992_RS14690 Genome accession   NZ_CP090854
Coordinates   3306417..3307028 (-) Length   203 a.a.
NCBI ID   WP_373949023.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3301417..3312028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS14670 (L0992_14665) aroB 3302349..3303437 (-) 1089 WP_017061124.1 3-dehydroquinate synthase -
  L0992_RS14675 (L0992_14670) aroK 3303463..3303981 (-) 519 WP_009848907.1 shikimate kinase AroK -
  L0992_RS14680 (L0992_14675) pilQ 3304158..3305876 (-) 1719 WP_128644404.1 type IV pilus secretin PilQ Machinery gene
  L0992_RS14685 (L0992_14680) pilP 3305912..3306430 (-) 519 WP_373951505.1 pilus assembly protein PilP Machinery gene
  L0992_RS14690 (L0992_14685) pilO 3306417..3307028 (-) 612 WP_373949023.1 type 4a pilus biogenesis protein PilO Machinery gene
  L0992_RS14695 (L0992_14690) pilN 3307021..3307620 (-) 600 WP_373949025.1 PilN domain-containing protein Machinery gene
  L0992_RS14700 (L0992_14695) pilM 3307604..3308629 (-) 1026 WP_265973894.1 type IV pilus assembly protein PilM Machinery gene
  L0992_RS14705 (L0992_14700) - 3308781..3311342 (+) 2562 WP_373949026.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23511.99 Da        Isoelectric Point: 4.4119

>NTDB_id=645272 L0992_RS14690 WP_373949023.1 3306417..3307028(-) (pilO) [Vibrio pomeroyi strain YSX02]
MASFQSMMSLQDLDIDEITEWPLLPQLLVILVLMILIQGVGTWLYVLPLDDELQQMKQQEQTLKTTLRIKANKVAALPKL
QSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLFRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=645272 L0992_RS14690 WP_373949023.1 3306417..3307028(-) (pilO) [Vibrio pomeroyi strain YSX02]
ATGGCTAGCTTTCAAAGCATGATGAGTCTACAAGATCTTGATATCGATGAGATAACCGAGTGGCCGTTGCTGCCTCAGCT
TCTAGTCATTCTGGTGTTGATGATATTAATCCAAGGTGTCGGCACTTGGCTTTATGTGTTGCCACTCGACGATGAACTGC
AACAGATGAAGCAGCAAGAACAAACCTTAAAGACGACCTTGCGAATAAAGGCCAATAAGGTTGCGGCCTTACCTAAATTG
CAGAGCCAGTTAGATGAACTAACCAGTCGCTACGATTATTTGTTGGAGCAGCTGCCGGTTCAAAAAGAACTGGCCAGTAT
GTTGGCGTCTGTGAATGAACTCGGCTTAGATAATTCGCTGACCTTCACTCGAATCGATTGGGGGCAAAAGCAGAACAAGG
AGTTTCTCTTTCGTTTACCGCTCAATATCGAACTGACGGGTGACTACCATGAGATTGGCGACTTCTCTGCGGCCATCGCC
AAGCTACCGCGCATCATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGCCAAGAAAGCAGCACGCTGCACTTTAGGGT
TCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(53-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

75.897

96.059

0.729
  pilO Vibrio campbellii strain DS40M4

70.899

93.103

0.66