Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LPY96_RS06305 Genome accession   NZ_CP090568
Coordinates   1331920..1333179 (-) Length   419 a.a.
NCBI ID   WP_033836749.1    Uniprot ID   A0A7Z7NHG2
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1326920..1338179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY96_RS06295 (LPY96_06300) coaE 1330428..1331036 (-) 609 WP_005915836.1 dephospho-CoA kinase -
  LPY96_RS06300 (LPY96_06305) - 1331050..1331913 (-) 864 WP_003491180.1 A24 family peptidase -
  LPY96_RS06305 (LPY96_06310) pilC 1331920..1333179 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  LPY96_RS06310 (LPY96_06315) comP 1333524..1333952 (+) 429 WP_269340062.1 pilin Machinery gene
  LPY96_RS06315 pilA2 1334049..1334462 (+) 414 WP_005921365.1 pilin Machinery gene
  LPY96_RS06320 (LPY96_06330) - 1334624..1335586 (+) 963 WP_005916682.1 IS1595 family transposase -
  LPY96_RS06325 (LPY96_06335) pilB 1335599..1337320 (+) 1722 WP_269340997.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPY96_RS06330 (LPY96_06340) - 1337598..1337765 (+) 168 WP_033836746.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45878.36 Da        Isoelectric Point: 10.3363

>NTDB_id=643513 LPY96_RS06305 WP_033836749.1 1331920..1333179(-) (pilC) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=643513 LPY96_RS06305 WP_033836749.1 1331920..1333179(-) (pilC) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAGCTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAACCACTTTTTGGCGCTGCCGGCAAAAAAGTGGGCCCTAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACTATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAAAACCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATTGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACACAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATCTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATTGCAAGGTTTGCGCGCACGACCGCCG
TGACCTTCAAGGCTGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGCGCACTGGATGCCATGCTGTTTAAGGTTGCTGAGTATTTCG
AGCAGGAGGTCAACAATGCCGTGGATGCGTTGAGCAGCCTGCTTGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7NHG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

52.97

96.42

0.511
  pilC Legionella pneumophila strain ERS1305867

51.605

96.659

0.499
  pilC Acinetobacter baumannii D1279779

51.238

96.42

0.494
  pilG Neisseria gonorrhoeae MS11

44.638

95.704

0.427
  pilG Neisseria meningitidis 44/76-A

44.14

95.704

0.422
  pilC Vibrio cholerae strain A1552

41.5

95.465

0.396
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

37.905

95.704

0.363