Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | LPY96_RS06325 | Genome accession | NZ_CP090568 |
| Coordinates | 1335599..1337320 (+) | Length | 573 a.a. |
| NCBI ID | WP_269340997.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. malvacearum strain CFBP 2036 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1334624..1335586 | 1335599..1337320 | flank | 13 |
Gene organization within MGE regions
Location: 1334624..1337320
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPY96_RS06320 (LPY96_06330) | - | 1334624..1335586 (+) | 963 | WP_005916682.1 | IS1595 family transposase | - |
| LPY96_RS06325 (LPY96_06335) | pilB | 1335599..1337320 (+) | 1722 | WP_269340997.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 573 a.a. Molecular weight: 62305.41 Da Isoelectric Point: 6.1466
>NTDB_id=643516 LPY96_RS06325 WP_269340997.1 1335599..1337320(+) (pilB) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
MRNLVGITGIARRLVQDGALDEASARAAMDHATQAKVPLPQWFAEKKLVTAAQLAAANAVEFGMPLMDVSAFDANQNAVK
LVSEELLQKHQVLPLFKRGNRLFIGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASFGSSLGNDDEE
MGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVKKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKLNQ
RIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQKLFLEA
IHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDIIMV
GEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPDNALL
AEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALMKAAHG
VTSLAEINRVTKD
MRNLVGITGIARRLVQDGALDEASARAAMDHATQAKVPLPQWFAEKKLVTAAQLAAANAVEFGMPLMDVSAFDANQNAVK
LVSEELLQKHQVLPLFKRGNRLFIGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASFGSSLGNDDEE
MGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVKKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKLNQ
RIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQKLFLEA
IHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDIIMV
GEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPDNALL
AEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALMKAAHG
VTSLAEINRVTKD
Nucleotide
Download Length: 1722 bp
>NTDB_id=643516 LPY96_RS06325 WP_269340997.1 1335599..1337320(+) (pilB) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
ATCAGGAATCTAGTTGGAATTACTGGTATTGCGCGGCGCCTTGTTCAGGATGGTGCGCTTGATGAGGCGAGCGCGCGTGC
GGCAATGGATCACGCAACCCAGGCCAAAGTTCCTTTACCGCAATGGTTCGCCGAAAAGAAGCTTGTAACAGCCGCACAAC
TCGCGGCCGCCAACGCAGTCGAGTTTGGCATGCCTTTGATGGATGTATCGGCGTTCGATGCCAACCAGAACGCGGTCAAG
CTCGTCAGTGAGGAGCTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTTCATAGGGGTGAG
CAACCCGACACAGACTCGCGCGCTGGACGACATCAAGTTCCATACGAACTTAGTGGTCGAGGCAATCCTCGTCGACGAAG
ATCAGATCCGCCGGACGCTCGAGCAGTGGCAGGCCAGCAATGCGTCGTTTGGTTCTTCGCTTGGCAACGACGACGAGGAA
ATGGGGGATCTGGACGTCTCGGCCGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGCCAAGGGCGACGA
CACGCCGGTGGTGAAGTTCGTCAAAAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACATCCATTTCGAGCCGT
ATGAAGACGACTACCGGGTGCGCTTGCGCATCGACGGCTTGTTGAAGAACGTGGCGAAGGCGCCGGTGAAGCTGAACCAG
CGCATCGCAGCGCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCATCAAGCT
CAACCTGTCCAAGACCAAGCAGATCGACTTTCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAAAAGTGGTGCTGCGTA
TCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCGGACCAGCAGAAGCTGTTCCTGGAGGCG
ATCCACAAGCCGTACGGGATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTTGTACACCGCGCTGGG
CATCCTCAACGACGAGACACGCAATATCTCCACTGCGGAGGACCCGGTTGAAATCCGCTTGCCTGGCGTCAATCAGGTGC
AGCAGAACAACAAGCGTGGCATGACCTTCGCCGCGGCTTTGCGCTCGTTCCTGCGACAGGATCCGGACATCATCATGGTC
GGCGAAATCCGTGACCTGGAGACGGCAGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGTGCTGTCGACGTTGCA
CACCAACGATGCGCCGCAGACCATCGCACGTCTGATGAACATGGGCATTGCGCCCTACAACATCACCTCGTCGGTGACGC
TGGTGATCGCGCAGCGTCTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCTGACAACGCATTGCTG
GCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAAGCGGTCGGTTGCGATGAGTGCACCGAAGG
TTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGCAATCGTGCTGGAAGGCGGGAACG
CGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGG
GTGACCAGCCTGGCCGAGATCAATCGTGTAACGAAGGACTAA
ATCAGGAATCTAGTTGGAATTACTGGTATTGCGCGGCGCCTTGTTCAGGATGGTGCGCTTGATGAGGCGAGCGCGCGTGC
GGCAATGGATCACGCAACCCAGGCCAAAGTTCCTTTACCGCAATGGTTCGCCGAAAAGAAGCTTGTAACAGCCGCACAAC
TCGCGGCCGCCAACGCAGTCGAGTTTGGCATGCCTTTGATGGATGTATCGGCGTTCGATGCCAACCAGAACGCGGTCAAG
CTCGTCAGTGAGGAGCTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTTCATAGGGGTGAG
CAACCCGACACAGACTCGCGCGCTGGACGACATCAAGTTCCATACGAACTTAGTGGTCGAGGCAATCCTCGTCGACGAAG
ATCAGATCCGCCGGACGCTCGAGCAGTGGCAGGCCAGCAATGCGTCGTTTGGTTCTTCGCTTGGCAACGACGACGAGGAA
ATGGGGGATCTGGACGTCTCGGCCGGCGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGCCAAGGGCGACGA
CACGCCGGTGGTGAAGTTCGTCAAAAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACATCCATTTCGAGCCGT
ATGAAGACGACTACCGGGTGCGCTTGCGCATCGACGGCTTGTTGAAGAACGTGGCGAAGGCGCCGGTGAAGCTGAACCAG
CGCATCGCAGCGCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCATCAAGCT
CAACCTGTCCAAGACCAAGCAGATCGACTTTCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAAAAGTGGTGCTGCGTA
TCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCGGACCAGCAGAAGCTGTTCCTGGAGGCG
ATCCACAAGCCGTACGGGATGGTGCTGGTGACCGGGCCGACCGGCTCGGGCAAGACGGTGTCGTTGTACACCGCGCTGGG
CATCCTCAACGACGAGACACGCAATATCTCCACTGCGGAGGACCCGGTTGAAATCCGCTTGCCTGGCGTCAATCAGGTGC
AGCAGAACAACAAGCGTGGCATGACCTTCGCCGCGGCTTTGCGCTCGTTCCTGCGACAGGATCCGGACATCATCATGGTC
GGCGAAATCCGTGACCTGGAGACGGCAGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGTGCTGTCGACGTTGCA
CACCAACGATGCGCCGCAGACCATCGCACGTCTGATGAACATGGGCATTGCGCCCTACAACATCACCTCGTCGGTGACGC
TGGTGATCGCGCAGCGTCTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCTGACAACGCATTGCTG
GCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAAGCGGTCGGTTGCGATGAGTGCACCGAAGG
TTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGCAATCGTGCTGGAAGGCGGGAACG
CGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGG
GTGACCAGCCTGGCCGAGATCAATCGTGTAACGAAGGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
55.81 |
99.127 |
0.553 |
| pilB | Acinetobacter baylyi ADP1 |
54.93 |
99.127 |
0.545 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.021 |
99.302 |
0.517 |
| pilB | Vibrio cholerae strain A1552 |
48.532 |
100 |
0.49 |
| pilF | Neisseria gonorrhoeae MS11 |
48.592 |
99.127 |
0.482 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
46.25 |
97.731 |
0.452 |
| pilB | Vibrio campbellii strain DS40M4 |
44.991 |
99.302 |
0.447 |