Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N5938_RS04340 Genome accession   NZ_CP107257
Coordinates   909545..910633 (-) Length   362 a.a.
NCBI ID   WP_023092225.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 904545..915633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS04315 (N5938_04315) - 904873..905859 (-) 987 WP_003097316.1 phospholipase -
  N5938_RS04320 (N5938_04320) aroE 905970..906794 (-) 825 WP_003097314.1 shikimate dehydrogenase -
  N5938_RS04325 (N5938_04325) hemF 906852..907769 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  N5938_RS04330 (N5938_04330) - 907960..908937 (+) 978 WP_023092226.1 NADPH:quinone reductase -
  N5938_RS04335 (N5938_04335) - 908947..909504 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  N5938_RS04340 (N5938_04340) dprA 909545..910633 (-) 1089 WP_023092225.1 DNA-processing protein DprA Machinery gene
  N5938_RS04345 (N5938_04345) tsaP 910768..911793 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  N5938_RS04350 (N5938_04350) def 911932..912438 (+) 507 WP_003097293.1 peptide deformylase -
  N5938_RS04355 (N5938_04355) fmt 912493..913437 (+) 945 WP_009316076.1 methionyl-tRNA formyltransferase -
  N5938_RS04360 (N5938_04360) rsmB 913434..914738 (+) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37731.25 Da        Isoelectric Point: 7.0742

>NTDB_id=642702 N5938_RS04340 WP_023092225.1 909545..910633(-) (dprA) [Pseudomonas aeruginosa strain 2019CK-00034]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGTPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=642702 N5938_RS04340 WP_023092225.1 909545..910633(-) (dprA) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCACCCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTCTCGGAGCTGCCGCTGGACAGTCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCTAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.69

98.066

0.409
  dprA Acinetobacter baumannii D1279779

37.569

100

0.376
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367