Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   U722_RS16915 Genome accession   NC_023073
Coordinates   3527351..3527692 (-) Length   113 a.a.
NCBI ID   WP_003151249.1    Uniprot ID   A0A9Q3LHX6
Organism   Bacillus amyloliquefaciens LFB112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3522351..3532692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS16900 (U722_17980) - 3522617..3525391 (+) 2775 WP_024085902.1 DEAD/DEAH box helicase -
  U722_RS16905 (U722_17985) - 3525504..3526361 (-) 858 WP_024085903.1 Cof-type HAD-IIB family hydrolase -
  U722_RS16910 (U722_17990) - 3526358..3527140 (-) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  U722_RS16915 (U722_17995) ssbB 3527351..3527692 (-) 342 WP_003151249.1 single-stranded DNA-binding protein Machinery gene
  U722_RS16920 (U722_18000) - 3527790..3528143 (-) 354 WP_003151247.1 hypothetical protein -
  U722_RS16925 (U722_18005) - 3528316..3528726 (+) 411 WP_003151245.1 YwpF-like family protein -
  U722_RS16930 (U722_18010) mscL 3528772..3529167 (-) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  U722_RS16935 (U722_18015) fabZ 3529224..3529649 (-) 426 WP_024085904.1 3-hydroxyacyl-ACP dehydratase FabZ -
  U722_RS16940 (U722_18020) - 3529845..3530909 (+) 1065 WP_003151240.1 tetratricopeptide repeat protein -
  U722_RS16945 (U722_18025) - 3530927..3531748 (-) 822 WP_015387588.1 flagellar hook-basal body protein -
  U722_RS16950 (U722_18030) - 3531773..3532570 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12661.53 Da        Isoelectric Point: 9.5812

>NTDB_id=64227 U722_RS16915 WP_003151249.1 3527351..3527692(-) (ssbB) [Bacillus amyloliquefaciens LFB112]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=64227 U722_RS16915 WP_003151249.1 3527351..3527692(-) (ssbB) [Bacillus amyloliquefaciens LFB112]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
TCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGGAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.991

100

0.77
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372

Multiple sequence alignment