Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LXM48_RS00500 Genome accession   NZ_CP090180
Coordinates   99917..101995 (+) Length   692 a.a.
NCBI ID   WP_234304418.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 94917..106995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS00480 (LXM48_00480) pilM 96937..97995 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  LXM48_RS00485 (LXM48_00485) pilN 97995..98651 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  LXM48_RS00490 (LXM48_00490) pilO 98648..99370 (+) 723 WP_234304417.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXM48_RS00495 (LXM48_00495) pilP 99370..99897 (+) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  LXM48_RS00500 (LXM48_00500) pilQ 99917..101995 (+) 2079 WP_234304418.1 type IV pilus secretin PilQ family protein Machinery gene
  LXM48_RS00505 (LXM48_00505) - 102084..102566 (+) 483 WP_234305130.1 shikimate kinase -
  LXM48_RS00510 (LXM48_00510) aroB 102597..103682 (+) 1086 WP_125280900.1 3-dehydroquinate synthase -
  LXM48_RS00515 (LXM48_00515) - 103690..104529 (+) 840 WP_234304419.1 hypothetical protein -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75240.46 Da        Isoelectric Point: 5.1564

>NTDB_id=641004 LXM48_RS00500 WP_234304418.1 99917..101995(+) (pilQ) [Acinetobacter johnsonii strain DJ-Red]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAIATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSANPAVATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPVHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQSIKLAPIQTDYIQLSYAKSADVLKLLEDSRDSKGS
ESNRTAGSESLALESLLSARGSAVSDSRTNTLIINDTQQNIDKIRRMIDLLDVAVKQVMVEARIVTASTDFSRELGIKWS
AKKLGNSPVWGGDFQPSFDLGVDLATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTE
IPYQTWSATEGLKTEFRAANLKLEVTPSITPDGKVQMALMVEKDSIGDITNDGLAIDTSELQTNVLVDDGETVVLGGIFD
DTKRNDYQKVPFLGDLPVVGNLFKNNVKTTIQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=641004 LXM48_RS00500 WP_234304418.1 99917..101995(+) (pilQ) [Acinetobacter johnsonii strain DJ-Red]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGCGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAGATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCGCCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCCCGTTTGGTT
TTAGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGTAGTATTGCGATTGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCGGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAACCCGGCGGTAGCAACACCTGTTGCTGCGGCACGTTCAGAGCAAGGTATTTCA
AATATTGGTTTCCAGCGTGGTTCAGACGGTGAAGGCCAAGTTGTGATTGATTTAAAAGGTAGCAATACCCCTGTTGATGT
GAAACAGCAAGGCAGTAAAATTGTGGTTCGTGTTTTGGGAAATAAAATTCCTGTCCATTTATCACGTCGTCTAAATGTGA
ATGATTTCGCAACACCAGTCTCGACCATTGATGCACAAAACGATGGTAGTAACGGCCTGATTACGATTCAATCGAACGGC
AGTTTTGAATATATGGCTTATCAGGCAGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACGGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTAGCTGATTTTACGGGTATTAACATGGTGGCTTCTGACACTGTACAAGGGAATATTACCTTGCGCCTTAAAGATGTG
CCATGGGATCAAGCGCTTGATATTATTATGAAAACCAAGAATTTGGATAAGCGACGCAATGGCAATGTGATTTGGATTGC
ACCTGTAGCTGAACTGATCAAGTCTGAGGAAGATGAGGCTAAAGCCATCGCACAAAGCATTAAACTTGCTCCGATTCAAA
CTGATTACATTCAATTGAGTTATGCAAAATCGGCGGATGTGTTGAAATTGTTAGAAGACTCTCGTGACAGTAAAGGGAGT
GAGTCGAATCGTACAGCGGGTTCAGAGTCATTGGCTTTAGAAAGCTTATTAAGTGCTCGTGGTAGTGCGGTTTCTGATTC
GCGTACCAATACGCTAATTATTAATGATACGCAGCAAAATATTGACAAGATTCGTCGCATGATTGACTTGTTGGATGTCG
CAGTGAAACAGGTGATGGTCGAAGCACGTATTGTCACAGCATCAACAGACTTTTCTCGTGAATTGGGGATTAAGTGGAGT
GCGAAGAAGCTGGGCAATAGCCCAGTGTGGGGTGGAGATTTCCAGCCAAGTTTTGATTTGGGTGTAGATTTAGCAACAAA
CACTGCTGGTACGTTTAACTTTGGTTTGTTGAAAATTTCAGACTATATGTTAAACCTTGAGTTAAGCGCACTTCAAGCGG
ATGGTCATGGTGAAGTGTTATCAGCGCCTAAAGTACTTACTGGTGATAAACAGAAAGCCTATATCTTGCGTGGTACAGAG
ATTCCTTATCAAACATGGAGTGCGACGGAAGGTTTAAAAACTGAGTTTCGCGCGGCTAACTTAAAGTTAGAAGTGACGCC
AAGTATTACTCCAGATGGTAAAGTTCAAATGGCGCTCATGGTTGAAAAAGACTCGATTGGTGATATCACCAATGATGGTC
TTGCGATAGATACCAGTGAATTACAAACCAATGTGTTGGTAGACGATGGTGAAACCGTCGTGCTTGGTGGTATTTTTGAT
GATACGAAACGTAATGACTATCAAAAAGTGCCATTCTTGGGTGATTTACCTGTGGTGGGTAACTTATTTAAGAATAATGT
CAAAACTACTATACAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-348)

AMIN domain (AMIN)

(55-135)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.097

100

0.679
  pilQ Acinetobacter baumannii strain A118

64.958

100

0.678
  comQ Acinetobacter baylyi ADP1

62.869

100

0.646
  pilQ Pseudomonas aeruginosa PAK

39.162

100

0.392
  pilQ Legionella pneumophila strain Lp02

37.736

99.566

0.376
  pilQ Legionella pneumophila strain ERS1305867

38.018

97.688

0.371
  pilQ Neisseria gonorrhoeae strain FA1090

35.18

100

0.367