Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LXM48_RS00485 Genome accession   NZ_CP090180
Coordinates   97995..98651 (+) Length   218 a.a.
NCBI ID   WP_004691498.1    Uniprot ID   A0A380U6M1
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92995..103651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS00470 (LXM48_00470) - 93405..94211 (+) 807 WP_125280896.1 putative RNA methyltransferase -
  LXM48_RS00475 (LXM48_00475) ponA 94243..96771 (-) 2529 WP_125280897.1 penicillin-binding protein PBP1a -
  LXM48_RS00480 (LXM48_00480) pilM 96937..97995 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  LXM48_RS00485 (LXM48_00485) pilN 97995..98651 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  LXM48_RS00490 (LXM48_00490) pilO 98648..99370 (+) 723 WP_234304417.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXM48_RS00495 (LXM48_00495) pilP 99370..99897 (+) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  LXM48_RS00500 (LXM48_00500) pilQ 99917..101995 (+) 2079 WP_234304418.1 type IV pilus secretin PilQ family protein Machinery gene
  LXM48_RS00505 (LXM48_00505) - 102084..102566 (+) 483 WP_234305130.1 shikimate kinase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24225.67 Da        Isoelectric Point: 5.4468

>NTDB_id=641001 LXM48_RS00485 WP_004691498.1 97995..98651(+) (pilN) [Acinetobacter johnsonii strain DJ-Red]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPNATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=641001 LXM48_RS00485 WP_004691498.1 97995..98651(+) (pilN) [Acinetobacter johnsonii strain DJ-Red]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTTGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTTCAATTAAAGTCATTGGAAGGTCTACAAGAACAGCGCAATGCA
ATTGTAGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTAGCTGTGCGTTTAGTGGATGAAATGGTACG
TGTCACTCCAAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAGTTCTTACGCAACCTAGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTAATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U6M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.378

95.872

0.665
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665