Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LXM48_RS00490 Genome accession   NZ_CP090180
Coordinates   98648..99370 (+) Length   240 a.a.
NCBI ID   WP_234304417.1    Uniprot ID   A0AA42QSQ8
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 93648..104370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS00475 (LXM48_00475) ponA 94243..96771 (-) 2529 WP_125280897.1 penicillin-binding protein PBP1a -
  LXM48_RS00480 (LXM48_00480) pilM 96937..97995 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  LXM48_RS00485 (LXM48_00485) pilN 97995..98651 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  LXM48_RS00490 (LXM48_00490) pilO 98648..99370 (+) 723 WP_234304417.1 type 4a pilus biogenesis protein PilO Machinery gene
  LXM48_RS00495 (LXM48_00495) pilP 99370..99897 (+) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  LXM48_RS00500 (LXM48_00500) pilQ 99917..101995 (+) 2079 WP_234304418.1 type IV pilus secretin PilQ family protein Machinery gene
  LXM48_RS00505 (LXM48_00505) - 102084..102566 (+) 483 WP_234305130.1 shikimate kinase -
  LXM48_RS00510 (LXM48_00510) aroB 102597..103682 (+) 1086 WP_125280900.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 26964.40 Da        Isoelectric Point: 4.8636

>NTDB_id=641002 LXM48_RS00490 WP_234304417.1 98648..99370(+) (pilO) [Acinetobacter johnsonii strain DJ-Red]
MSRDEFEELTSENPAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAASVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=641002 LXM48_RS00490 WP_234304417.1 98648..99370(+) (pilO) [Acinetobacter johnsonii strain DJ-Red]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCCTGCTGTAACCAAGAAAAAAATGACGGTTGATAAATTTTT
TCAACAGTTTAATACCTTAGATCCAAACAATTACGGCAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTAGTGATTGGAGCTTTGGGTTATTTTGTCGTGATTAAACCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAG
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAACTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCTAATTTTAATCAGCAGTTAGAACAGCTGCCGAAAGAAACTGAAATTCCTGGCTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAACCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCCATTGAAGCGACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTACCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAATAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAGG
CTAAAACTTACCGCTATGTCGGGGCGACAGCTGCTGCAAGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.385

99.583

0.721
  comO Acinetobacter baylyi ADP1

67.755

100

0.692