Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LWM38_RS14065 Genome accession   NZ_CP090019
Coordinates   3116994..3118106 (-) Length   370 a.a.
NCBI ID   WP_137008532.1    Uniprot ID   -
Organism   Vibrio kanaloae strain KH-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3111994..3123106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS14035 (LWM38_14035) hemF 3112516..3113433 (-) 918 WP_136981228.1 oxygen-dependent coproporphyrinogen oxidase -
  LWM38_RS14040 (LWM38_14040) - 3113453..3114010 (-) 558 WP_004735778.1 L-threonylcarbamoyladenylate synthase -
  LWM38_RS14045 (LWM38_14045) purE 3114206..3114691 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LWM38_RS14050 (LWM38_14050) - 3114697..3115827 (+) 1131 WP_077681024.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LWM38_RS14055 (LWM38_14055) - 3115932..3116501 (-) 570 WP_077681025.1 type I DNA topoisomerase -
  LWM38_RS14060 (LWM38_14060) - 3116514..3116990 (-) 477 WP_077681026.1 DUF494 family protein -
  LWM38_RS14065 (LWM38_14065) dprA 3116994..3118106 (-) 1113 WP_137008532.1 DNA-processing protein DprA Machinery gene
  LWM38_RS14070 (LWM38_14070) - 3118103..3119209 (-) 1107 WP_233894371.1 LysM peptidoglycan-binding domain-containing protein -
  LWM38_RS14075 (LWM38_14075) def 3119350..3119862 (+) 513 WP_004735769.1 peptide deformylase -
  LWM38_RS14080 (LWM38_14080) fmt 3119900..3120847 (+) 948 WP_136981233.1 methionyl-tRNA formyltransferase -
  LWM38_RS14085 (LWM38_14085) rsmB 3120967..3122247 (+) 1281 WP_233895434.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40148.87 Da        Isoelectric Point: 6.8796

>NTDB_id=640266 LWM38_RS14065 WP_137008532.1 3116994..3118106(-) (dprA) [Vibrio kanaloae strain KH-4]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSNQQLQAIGLSAKQISYLREQAPREVEACLVWQARQPNHHII
TPNCPHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASIEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLGSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKTGACLVQSAQDVLIEIKSLLDWSIEQQPSLFEPTPNEDENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=640266 LWM38_RS14065 WP_137008532.1 3116994..3118106(-) (dprA) [Vibrio kanaloae strain KH-4]
GTGAATGAGCAACAACTGAGCGCTTGGCTAACTCTGAGTTTTGTTCCGCAACTGGGAGGCAAGCGCCTTTCTCGCCTGCT
GAGTATTGACTCTCCTTCCAATATTGTTGGCTACTCAAATCAGCAGCTACAAGCTATTGGGTTGTCAGCTAAGCAAATCT
CCTATTTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGTATGGCAAGCAAGGCAGCCTAATCATCACATCATT
ACCCCAAATTGCCCTCATTATCCTAAACTGCTGAATGAGACCGCCTCTGCGCCAAGCGTACTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTATCGAAGGGCTGCAAACCGCGAAGTCTT
TCGCCAAAGAGTTCGTTCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATTGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTGTTGGGATCAGGCTTGGGCTCCATTTACCCTGCACGTCACCGAAATCT
AGCGGATAGAATTTGTGAGAATGGCGCGCTGATCTCAGAATTCCGCCCAAGCGCTAAACCTCGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTGTCTTTGGGGACTCTCGTTGTTGAGGCTGCTGAGAAAAGCGGTTCTTTGATTACA
GCTCGCTATGCTATGGAGCAAGGCCGAGAAGTGTTTGCGCTTCCTGGCTCAATTCATAGCCCAACCAGCCGCGGAGGCAA
TAGCTTAATCAAAACTGGCGCATGTTTGGTACAGAGCGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGAGCAGCAGCCCAGCTTATTCGAACCTACGCCGAATGAGGATGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAAGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(312-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.043

100

0.473
  dprA Haemophilus influenzae Rd KW20

44.807

91.081

0.408
  dprA Neisseria meningitidis MC58

37.783

100

0.405
  dprA Neisseria meningitidis strain C311

37.783

100

0.405
  dprA Legionella pneumophila strain ERS1305867

45.427

88.649

0.403
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

36.709

100

0.392
  dprA Acinetobacter baumannii strain A118

41.566

89.73

0.373
  dprA Acinetobacter baumannii D1279779

40.785

89.459

0.365
  dprA Acinetobacter baylyi ADP1

39.645

91.351

0.362